miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 68278 0.67 0.659443
Target:  5'- gCCCGc-GCGGCggGGCCccgGCCgCgGGCg -3'
miRNA:   3'- -GGGCauCGUCGa-CCGGua-CGG-GgUCG- -5'
23778 3' -59.8 NC_005261.1 + 103692 0.67 0.659443
Target:  5'- gCCCGUuuaUAGC-GGCCAcGUcaCCCAGCa -3'
miRNA:   3'- -GGGCAuc-GUCGaCCGGUaCG--GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 118599 0.67 0.659443
Target:  5'- gCCGcggAGCucgcGCUgucGGCCGuUGCCCUGGCc -3'
miRNA:   3'- gGGCa--UCGu---CGA---CCGGU-ACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 75524 0.67 0.666477
Target:  5'- gCCGUggucgccgcgcugcAGCGGCUgcgcguccugccGGCCAU-CCCCGGg -3'
miRNA:   3'- gGGCA--------------UCGUCGA------------CCGGUAcGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 90374 0.67 0.666477
Target:  5'- gCUCGUGcGCGGCgaGGCCccGCcggcggggcuggcgCCCGGCg -3'
miRNA:   3'- -GGGCAU-CGUCGa-CCGGuaCG--------------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4082 0.67 0.659443
Target:  5'- aCCGgcGGCAGCgGcGCCGUcacGCuCCCGGUg -3'
miRNA:   3'- gGGCa-UCGUCGaC-CGGUA---CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 107888 0.67 0.658436
Target:  5'- gCCCGcGGCccGCUuguccgcGGCCGcgGCCUCGGCc -3'
miRNA:   3'- -GGGCaUCGu-CGA-------CCGGUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 119619 0.67 0.679505
Target:  5'- gCUGUAcgugcacuGCGGCgUGGCCGacaacGCCaCCGGCg -3'
miRNA:   3'- gGGCAU--------CGUCG-ACCGGUa----CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 42667 0.67 0.679505
Target:  5'- gCCa-AGCGGC-GGCCGggccGCCgCCGGCa -3'
miRNA:   3'- gGGcaUCGUCGaCCGGUa---CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 59470 0.67 0.679505
Target:  5'- gUCGgggGGCAGCgccggcgcGGCCGccGCgCCAGCg -3'
miRNA:   3'- gGGCa--UCGUCGa-------CCGGUa-CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 103094 0.67 0.679505
Target:  5'- gCCGggccCAGCccGGCCAgcgcCCCCGGCg -3'
miRNA:   3'- gGGCauc-GUCGa-CCGGUac--GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 113164 0.67 0.679505
Target:  5'- gCCG-AGCGccugcucCUGGCCGUcaugGCCaCCAGCg -3'
miRNA:   3'- gGGCaUCGUc------GACCGGUA----CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 31276 0.67 0.649375
Target:  5'- cCCCGaGGC-GCUGGCCGagaucgcgGCCCgCcGCc -3'
miRNA:   3'- -GGGCaUCGuCGACCGGUa-------CGGG-GuCG- -5'
23778 3' -59.8 NC_005261.1 + 32310 0.67 0.649375
Target:  5'- cCCCGccGCcGCcgcGGCCGcgGCgCCCGGCg -3'
miRNA:   3'- -GGGCauCGuCGa--CCGGUa-CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 88757 0.67 0.65743
Target:  5'- gCCaugGUGGCGGCgcugcgcuccucGGCCcugGCCgCCGGCg -3'
miRNA:   3'- -GGg--CAUCGUCGa-----------CCGGua-CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 135206 0.68 0.56899
Target:  5'- gCCGaGGCGGCgcagagGGCCAcGgCCgAGCg -3'
miRNA:   3'- gGGCaUCGUCGa-----CCGGUaCgGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 29851 0.68 0.56899
Target:  5'- gCCGUGcucgccggccgcGCGGCgccgGcGCCGcUGCCgCCAGCg -3'
miRNA:   3'- gGGCAU------------CGUCGa---C-CGGU-ACGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 46253 0.68 0.609051
Target:  5'- gCCGcGGCGGC-GGCCGcgaccgUGUCCCcggGGCg -3'
miRNA:   3'- gGGCaUCGUCGaCCGGU------ACGGGG---UCG- -5'
23778 3' -59.8 NC_005261.1 + 99572 0.68 0.609051
Target:  5'- gUCGUAGCucugGGCCugcGCgCCCAGCg -3'
miRNA:   3'- gGGCAUCGucgaCCGGua-CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 42347 0.68 0.59598
Target:  5'- uCCUGgaugcugGGCgGGCUGGCCGcgcaaacguacuggUGCcggCCCAGCu -3'
miRNA:   3'- -GGGCa------UCG-UCGACCGGU--------------ACG---GGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.