Results 1 - 20 of 272 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23778 | 3' | -59.8 | NC_005261.1 | + | 37888 | 0.79 | 0.132051 |
Target: 5'- gCUGgAGCccgAGCUGGCCAUGCCCUAcGCg -3' miRNA: 3'- gGGCaUCG---UCGACCGGUACGGGGU-CG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 63957 | 0.78 | 0.161681 |
Target: 5'- cCCCGUGcGCAGCUGGUgCGUcaGCgCCAGCg -3' miRNA: 3'- -GGGCAU-CGUCGACCG-GUA--CGgGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 9858 | 0.78 | 0.165781 |
Target: 5'- gCCCGcccCAGCcGGCC-UGCCCCGGCg -3' miRNA: 3'- -GGGCaucGUCGaCCGGuACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 9915 | 0.78 | 0.165781 |
Target: 5'- gCCCGcccCAGCcGGCC-UGCCCCGGCg -3' miRNA: 3'- -GGGCaucGUCGaCCGGuACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 107435 | 0.78 | 0.169974 |
Target: 5'- uCCgGUAGCcguccacGUUGGCCAccGCCCCGGCa -3' miRNA: 3'- -GGgCAUCGu------CGACCGGUa-CGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 50783 | 0.77 | 0.178644 |
Target: 5'- aCCGcGGCGGC-GGCC--GCCCCGGCg -3' miRNA: 3'- gGGCaUCGUCGaCCGGuaCGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 101437 | 0.76 | 0.22266 |
Target: 5'- gCCGaGGCGGCgcGGuCCAgcgcugGCCCCAGCg -3' miRNA: 3'- gGGCaUCGUCGa-CC-GGUa-----CGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 127675 | 0.76 | 0.22266 |
Target: 5'- -gCGggacGGCGGC-GGCCGcUGCCCCGGCg -3' miRNA: 3'- ggGCa---UCGUCGaCCGGU-ACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 15246 | 0.76 | 0.22266 |
Target: 5'- cCCCGcucGCAGUgGGCCGcgaucGCCCCGGCg -3' miRNA: 3'- -GGGCau-CGUCGaCCGGUa----CGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 130467 | 0.76 | 0.212142 |
Target: 5'- gCCCG-AGCGGCUcgcGG-CGUGCCUCGGCg -3' miRNA: 3'- -GGGCaUCGUCGA---CCgGUACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 29552 | 0.76 | 0.212142 |
Target: 5'- gCCCGgaccuGCAGCUGGCgCGccUGCUgCAGCg -3' miRNA: 3'- -GGGCau---CGUCGACCG-GU--ACGGgGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 2796 | 0.76 | 0.202054 |
Target: 5'- gCCGccGGCGGCcgggaggGGCCGggcgGCCCCAGCc -3' miRNA: 3'- gGGCa-UCGUCGa------CCGGUa---CGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 99467 | 0.75 | 0.256894 |
Target: 5'- aCCCGcGGCGgcGCUGGCCGcUGCggCCAGCg -3' miRNA: 3'- -GGGCaUCGU--CGACCGGU-ACGg-GGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 78048 | 0.75 | 0.245027 |
Target: 5'- gCCgGUGGUcGCgGGCCcgGCCCCcGCg -3' miRNA: 3'- -GGgCAUCGuCGaCCGGuaCGGGGuCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 53560 | 0.75 | 0.243287 |
Target: 5'- gCCGcggcccaggcgcacUAGCGGCcgcgGGCCGgcggcGCCCCAGCg -3' miRNA: 3'- gGGC--------------AUCGUCGa---CCGGUa----CGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 100186 | 0.75 | 0.242709 |
Target: 5'- gCCGUGGCGGCggggcagcguggcGGCCAgcaGCCCC-GCg -3' miRNA: 3'- gGGCAUCGUCGa------------CCGGUa--CGGGGuCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 95164 | 0.74 | 0.275571 |
Target: 5'- aCCUGcaguGCGGCgagggGGaCGUGCCCCAGCc -3' miRNA: 3'- -GGGCau--CGUCGa----CCgGUACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 102524 | 0.74 | 0.288616 |
Target: 5'- gUCCGcguGCAGCuUGGCCGccugcgGCCCCAGg -3' miRNA: 3'- -GGGCau-CGUCG-ACCGGUa-----CGGGGUCg -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 127781 | 0.74 | 0.295318 |
Target: 5'- gCCCGgcugcucgAGCGGCgGGCCGgcGCCgCGGCg -3' miRNA: 3'- -GGGCa-------UCGUCGaCCGGUa-CGGgGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 20923 | 0.74 | 0.301453 |
Target: 5'- cCCCG-AGCuGCUGGCCAgcgGCauccuccUCCGGCu -3' miRNA: 3'- -GGGCaUCGuCGACCGGUa--CG-------GGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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