miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 20923 0.74 0.301453
Target:  5'- cCCCG-AGCuGCUGGCCAgcgGCauccuccUCCGGCu -3'
miRNA:   3'- -GGGCaUCGuCGACCGGUa--CG-------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 107741 0.74 0.302141
Target:  5'- cCUCGgccGCGGggggGGCCAcGCCCCAGCg -3'
miRNA:   3'- -GGGCau-CGUCga--CCGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 88016 0.74 0.302141
Target:  5'- gCCCGUuaaAGCGGCcGGCgGUGCCUgGGg -3'
miRNA:   3'- -GGGCA---UCGUCGaCCGgUACGGGgUCg -5'
23778 3' -59.8 NC_005261.1 + 115561 0.73 0.318292
Target:  5'- gUCCGUGuggcagcacacgaacGCGGCgaggaacUGGCCGUacgugaGCCCCAGCg -3'
miRNA:   3'- -GGGCAU---------------CGUCG-------ACCGGUA------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 65861 0.73 0.323335
Target:  5'- gUCCGcGGCGGCuUGuaCA-GCCCCAGCg -3'
miRNA:   3'- -GGGCaUCGUCG-ACcgGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 58230 0.73 0.338069
Target:  5'- gCCCGcGGCGGCgggguccucGGCCAUGCCgCGccGCg -3'
miRNA:   3'- -GGGCaUCGUCGa--------CCGGUACGGgGU--CG- -5'
23778 3' -59.8 NC_005261.1 + 39394 0.73 0.338069
Target:  5'- gCCC-UGGCGGCgacCCGaGCCCCAGCg -3'
miRNA:   3'- -GGGcAUCGUCGaccGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 66542 0.73 0.343341
Target:  5'- aCgCGcAGCAGCUggucGGCCGUGCCgcgcucgaacgaguCCAGCa -3'
miRNA:   3'- -GgGCaUCGUCGA----CCGGUACGG--------------GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 128836 0.73 0.345618
Target:  5'- gCUCGc-GCGGCUGGCCGccacggUGCCCC-GCc -3'
miRNA:   3'- -GGGCauCGUCGACCGGU------ACGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 126927 0.73 0.345618
Target:  5'- aUCCGUuccAGCAGCgcGGCCAgggGCgCCgGGCg -3'
miRNA:   3'- -GGGCA---UCGUCGa-CCGGUa--CG-GGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 121386 0.72 0.353286
Target:  5'- cCCCGcGGCGGCgGcGCC-UGCCCgAGUg -3'
miRNA:   3'- -GGGCaUCGUCGaC-CGGuACGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 115412 0.72 0.353286
Target:  5'- aCCGcgGGCGGCagccggGGCCGcgGCCCgAGCu -3'
miRNA:   3'- gGGCa-UCGUCGa-----CCGGUa-CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 15915 0.72 0.361074
Target:  5'- cCCCGc-GCAGCcggGGCCGgggccgggGCCCgGGCa -3'
miRNA:   3'- -GGGCauCGUCGa--CCGGUa-------CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 77459 0.72 0.368981
Target:  5'- gCCCGgggcGCGGCUGcaGCCGcGCCCCcGCc -3'
miRNA:   3'- -GGGCau--CGUCGAC--CGGUaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 30719 0.72 0.368981
Target:  5'- cCCCGgcGCcgGGCcgccaGGCCcgaGCCCCAGCc -3'
miRNA:   3'- -GGGCauCG--UCGa----CCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 65381 0.72 0.368981
Target:  5'- gCCCGgcauuaccuGCGGCgGGUUGggcgGCCCCGGCa -3'
miRNA:   3'- -GGGCau-------CGUCGaCCGGUa---CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 49203 0.72 0.385147
Target:  5'- gCCGacagcgagGGCGGgaGGCCG-GCgCCCAGCg -3'
miRNA:   3'- gGGCa-------UCGUCgaCCGGUaCG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 28431 0.72 0.385147
Target:  5'- aCCCGcgcgcaccGCGGCcGGCCAUGgcgucUCCCGGCg -3'
miRNA:   3'- -GGGCau------CGUCGaCCGGUAC-----GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 93428 0.72 0.385147
Target:  5'- cCCCGcgauguGCuugagGGCcgUGGCCAgcaccgGCCCCAGCg -3'
miRNA:   3'- -GGGCau----CG-----UCG--ACCGGUa-----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 45287 0.72 0.393404
Target:  5'- gCCGUAcCGGCUGGCCuuguaccGCCCCGa- -3'
miRNA:   3'- gGGCAUcGUCGACCGGua-----CGGGGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.