miRNA display CGI


Results 61 - 80 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 21795 0.7 0.454285
Target:  5'- gCCGccGCAGCcgccggccgGGCCggGCCCgCGGCg -3'
miRNA:   3'- gGGCauCGUCGa--------CCGGuaCGGG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 69248 0.7 0.454285
Target:  5'- gCCGaGGC-GCUGGCCcgcgccGaCCCCGGCg -3'
miRNA:   3'- gGGCaUCGuCGACCGGua----C-GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 24550 0.7 0.454285
Target:  5'- aCCUGgccgGGCGGC--GCCAgGUCCCAGCc -3'
miRNA:   3'- -GGGCa---UCGUCGacCGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 60707 0.7 0.454285
Target:  5'- gCgCGUGGCGGCgcacGGCgGUGCCaCC-GCg -3'
miRNA:   3'- -GgGCAUCGUCGa---CCGgUACGG-GGuCG- -5'
23778 3' -59.8 NC_005261.1 + 35910 0.7 0.46248
Target:  5'- gCCGcGGCAGCgcGGCCccGCgccgcagCCCAGCg -3'
miRNA:   3'- gGGCaUCGUCGa-CCGGuaCG-------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 33710 0.7 0.463396
Target:  5'- gCCCGcugcacgaggGGCGGUgggGGCC-UGCCCCucGCg -3'
miRNA:   3'- -GGGCa---------UCGUCGa--CCGGuACGGGGu-CG- -5'
23778 3' -59.8 NC_005261.1 + 2830 0.7 0.463396
Target:  5'- nCCCGagcucgGGCGGCagGGCCGgcgGCCCCcuCg -3'
miRNA:   3'- -GGGCa-----UCGUCGa-CCGGUa--CGGGGucG- -5'
23778 3' -59.8 NC_005261.1 + 71416 0.7 0.463396
Target:  5'- gUCCGgcGCGG--GGCCcgGCCCgGGCc -3'
miRNA:   3'- -GGGCauCGUCgaCCGGuaCGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 107954 0.7 0.463396
Target:  5'- gUCCGUGcGCGGCcgcggGGCCAUGCagUGGCg -3'
miRNA:   3'- -GGGCAU-CGUCGa----CCGGUACGggGUCG- -5'
23778 3' -59.8 NC_005261.1 + 31078 0.7 0.463396
Target:  5'- gCCCGcccGCGuGCUGGgccCCAUGCcgCCCGGCg -3'
miRNA:   3'- -GGGCau-CGU-CGACC---GGUACG--GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 23235 0.7 0.463396
Target:  5'- gCCgGU-GCAGCgGGCCGgccUGCUCgGGCg -3'
miRNA:   3'- -GGgCAuCGUCGaCCGGU---ACGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 46318 0.7 0.472601
Target:  5'- cCCCGcgaGGCuGCgcuUGGCCAUGCgCCCAa- -3'
miRNA:   3'- -GGGCa--UCGuCG---ACCGGUACG-GGGUcg -5'
23778 3' -59.8 NC_005261.1 + 44220 0.7 0.472601
Target:  5'- gCCCGggAGCGcgcgcuGCUGGCCG---CCCAGCg -3'
miRNA:   3'- -GGGCa-UCGU------CGACCGGUacgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 61038 0.7 0.472601
Target:  5'- aCCGcGGCAGCUGGCUGgugcuggGCCUgGaGCa -3'
miRNA:   3'- gGGCaUCGUCGACCGGUa------CGGGgU-CG- -5'
23778 3' -59.8 NC_005261.1 + 5510 0.7 0.472601
Target:  5'- gCCGcGGCAGCggcGGCgAgGCCgCCGGCu -3'
miRNA:   3'- gGGCaUCGUCGa--CCGgUaCGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 2607 0.7 0.472601
Target:  5'- gCCGUcGGCGGCggGGCCGccggGCggcauggggCCCAGCa -3'
miRNA:   3'- gGGCA-UCGUCGa-CCGGUa---CG---------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 78075 0.7 0.479099
Target:  5'- gCCGgcccaGGC-GCUGGCCcccgcgccggcccagGCCCCGGCc -3'
miRNA:   3'- gGGCa----UCGuCGACCGGua-------------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 35700 0.7 0.481898
Target:  5'- cCCCGgugGGCcgggGGCUcGGUgGcgGCCCCGGCc -3'
miRNA:   3'- -GGGCa--UCG----UCGA-CCGgUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 59154 0.7 0.481898
Target:  5'- cCCCG-GGCGcGC-GGCgCccGCCCCAGCc -3'
miRNA:   3'- -GGGCaUCGU-CGaCCG-GuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 83075 0.7 0.481898
Target:  5'- cCCCGcGGCGGCcGGCgCuuccagcGCCuCCAGCg -3'
miRNA:   3'- -GGGCaUCGUCGaCCG-Gua-----CGG-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.