miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 2684 0.7 0.485641
Target:  5'- aCCCG--GCGGCgcgccggcuuuUGGCCGgcgccgggccccugGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGUCG-----------ACCGGUa-------------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 19387 0.7 0.491282
Target:  5'- gCCGUAGUAGCggGGCuCGgugaucgGCCCguGUg -3'
miRNA:   3'- gGGCAUCGUCGa-CCG-GUa------CGGGguCG- -5'
23778 3' -59.8 NC_005261.1 + 44285 0.7 0.4998
Target:  5'- gCCCGccgccAGCGGCgGGCCAgggccgcUGCCCgCGGg -3'
miRNA:   3'- -GGGCa----UCGUCGaCCGGU-------ACGGG-GUCg -5'
23778 3' -59.8 NC_005261.1 + 51746 0.7 0.50075
Target:  5'- cCCCGggcuGCcGCUGGCCGUGaagCUGGCg -3'
miRNA:   3'- -GGGCau--CGuCGACCGGUACgg-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 62600 0.69 0.510298
Target:  5'- gCCGggaaccGGCAGCgguaggcGGCCAUcaGCgCCAGCg -3'
miRNA:   3'- gGGCa-----UCGUCGa------CCGGUA--CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 966 0.69 0.510298
Target:  5'- gCCCGUagAGCGGCgGGCCGcGCgCagAGCg -3'
miRNA:   3'- -GGGCA--UCGUCGaCCGGUaCGgGg-UCG- -5'
23778 3' -59.8 NC_005261.1 + 84855 0.69 0.510298
Target:  5'- aCCGcgGGCcGCgUGGCCAUGaCCgAGCg -3'
miRNA:   3'- gGGCa-UCGuCG-ACCGGUACgGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 13086 0.69 0.510298
Target:  5'- gCCCGUcggcgGGCGGCgGGCUcgGCUCgGGg -3'
miRNA:   3'- -GGGCA-----UCGUCGaCCGGuaCGGGgUCg -5'
23778 3' -59.8 NC_005261.1 + 30028 0.69 0.510298
Target:  5'- uCUCGgcuGCAGCgGGCCGcgGCCugCCGGCc -3'
miRNA:   3'- -GGGCau-CGUCGaCCGGUa-CGG--GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 97859 0.69 0.514138
Target:  5'- gCCGcGGCAGCgcGGCCGgcaucgauuuccgaGCCCCGGg -3'
miRNA:   3'- gGGCaUCGUCGa-CCGGUa-------------CGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 23472 0.69 0.519921
Target:  5'- gCCCGcGGCGGCgagugcgcgGGCCc-GCCUgGGCa -3'
miRNA:   3'- -GGGCaUCGUCGa--------CCGGuaCGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 127303 0.69 0.519921
Target:  5'- cCCCGccggcUGGCGGUggGGCCcUGCCgCCcGCg -3'
miRNA:   3'- -GGGC-----AUCGUCGa-CCGGuACGG-GGuCG- -5'
23778 3' -59.8 NC_005261.1 + 123077 0.69 0.529614
Target:  5'- cCCCGagaGGCGGCcGGCCAcgccauuucGCCgCGGCg -3'
miRNA:   3'- -GGGCa--UCGUCGaCCGGUa--------CGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 62426 0.69 0.529614
Target:  5'- gCCGaGGcCAGCgcgaGCCGgucgccggGCCCCAGCa -3'
miRNA:   3'- gGGCaUC-GUCGac--CGGUa-------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 56796 0.69 0.529614
Target:  5'- gCCCacuuccGGCAGCgGGCCAcgguguuccuggUGCCgCGGCg -3'
miRNA:   3'- -GGGca----UCGUCGaCCGGU------------ACGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 12140 0.69 0.529614
Target:  5'- gCCGccGCGGC-GGCCGcgcagGCCCCAaGCc -3'
miRNA:   3'- gGGCauCGUCGaCCGGUa----CGGGGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 79782 0.69 0.529614
Target:  5'- gCUCGUGGCAGUacgucacGGCCAUGgcgucCCCCAacauGCg -3'
miRNA:   3'- -GGGCAUCGUCGa------CCGGUAC-----GGGGU----CG- -5'
23778 3' -59.8 NC_005261.1 + 71783 0.69 0.529614
Target:  5'- gCCCGcucGCAGCUgagcgcGGCCcgGCCCguGg -3'
miRNA:   3'- -GGGCau-CGUCGA------CCGGuaCGGGguCg -5'
23778 3' -59.8 NC_005261.1 + 23557 0.69 0.529614
Target:  5'- gCCGUcgcagguggGGCagGGCUGGCCGUGgCUCAugGCg -3'
miRNA:   3'- gGGCA---------UCG--UCGACCGGUACgGGGU--CG- -5'
23778 3' -59.8 NC_005261.1 + 20855 0.69 0.53351
Target:  5'- -gCGUGGCGGCUcuugcgccgcgggccGGCCAU-CgCCAGCu -3'
miRNA:   3'- ggGCAUCGUCGA---------------CCGGUAcGgGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.