miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 20556 0.69 0.539373
Target:  5'- -aCGUGGCGGCgGGCUgcgcagcgGCgCCGGCg -3'
miRNA:   3'- ggGCAUCGUCGaCCGGua------CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 118164 0.69 0.540352
Target:  5'- gCCGUcGCGGCggggcuugccgucugGGCCGcggGCCCCGcGCc -3'
miRNA:   3'- gGGCAuCGUCGa--------------CCGGUa--CGGGGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 45391 0.69 0.549192
Target:  5'- cCCUGUucguGCAGCU-GUCGUGCCUgcugCGGCg -3'
miRNA:   3'- -GGGCAu---CGUCGAcCGGUACGGG----GUCG- -5'
23778 3' -59.8 NC_005261.1 + 17309 0.69 0.549192
Target:  5'- aCCCGgccggggucGCGGCccGGCCcgGC-CCAGCu -3'
miRNA:   3'- -GGGCau-------CGUCGa-CCGGuaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 62032 0.69 0.549192
Target:  5'- gCCGUccucccGCGGCUcGGCCG-GCUCCAGg -3'
miRNA:   3'- gGGCAu-----CGUCGA-CCGGUaCGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 76387 0.69 0.549192
Target:  5'- gCCGccGCcaacauaaaaaGGCcGGCCG-GCCCCGGCg -3'
miRNA:   3'- gGGCauCG-----------UCGaCCGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 88158 0.69 0.553136
Target:  5'- cCCCGgccgcGCAGCcgGGCCGgggcgacgccggcgGCgCCGGCg -3'
miRNA:   3'- -GGGCau---CGUCGa-CCGGUa-------------CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 125621 0.69 0.55511
Target:  5'- gCCCGcccuuagaaguccAGCAGCUGGUUgaggcgGUcCCCCAGCa -3'
miRNA:   3'- -GGGCa------------UCGUCGACCGG------UAcGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 7864 0.69 0.558077
Target:  5'- gCCGUuuuuuuguuucagGGCAGCgagcGGCUcUGUUCCGGCg -3'
miRNA:   3'- gGGCA-------------UCGUCGa---CCGGuACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 72730 0.69 0.558077
Target:  5'- cCCCGUccgcgcgGGCGGCccgcauggcgGGCCGcaUGC-CCAGCa -3'
miRNA:   3'- -GGGCA-------UCGUCGa---------CCGGU--ACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 89824 0.69 0.559066
Target:  5'- uCCCGcGGCAcuucGCggccgGGCCGgaggGCCgCGGCg -3'
miRNA:   3'- -GGGCaUCGU----CGa----CCGGUa---CGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 36598 0.69 0.559066
Target:  5'- aCCGggggggGGCAGCgcuCCugcGCCCCGGCg -3'
miRNA:   3'- gGGCa-----UCGUCGaccGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 14239 0.69 0.559066
Target:  5'- aCCGcgcCGGCcggGGCCuuUGCCCCGGUg -3'
miRNA:   3'- gGGCaucGUCGa--CCGGu-ACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4000 0.69 0.559066
Target:  5'- gUCGUAGCGGCggcucaUGGCCAcgcagGCCgCCAcguGCg -3'
miRNA:   3'- gGGCAUCGUCG------ACCGGUa----CGG-GGU---CG- -5'
23778 3' -59.8 NC_005261.1 + 1066 0.69 0.559066
Target:  5'- -gCGcgGGgGGCUGGCCccGCUCCAGg -3'
miRNA:   3'- ggGCa-UCgUCGACCGGuaCGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 51790 0.69 0.559066
Target:  5'- cCCUGcUGGCcG-UGGCCAUGCUCguGCu -3'
miRNA:   3'- -GGGC-AUCGuCgACCGGUACGGGguCG- -5'
23778 3' -59.8 NC_005261.1 + 118323 0.68 0.566008
Target:  5'- aCCGc-GCuGCUGGCCAUGaccugcgggcugcuCCUCGGCc -3'
miRNA:   3'- gGGCauCGuCGACCGGUAC--------------GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 109865 0.68 0.567001
Target:  5'- uCCUGggGGCAGCggGGCCcgcgggcgggcGCCCCGGg -3'
miRNA:   3'- -GGGCa-UCGUCGa-CCGGua---------CGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 29851 0.68 0.56899
Target:  5'- gCCGUGcucgccggccgcGCGGCgccgGcGCCGcUGCCgCCAGCg -3'
miRNA:   3'- gGGCAU------------CGUCGa---C-CGGU-ACGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 135206 0.68 0.56899
Target:  5'- gCCGaGGCGGCgcagagGGCCAcGgCCgAGCg -3'
miRNA:   3'- gGGCaUCGUCGa-----CCGGUaCgGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.