miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 115493 0.66 0.728849
Target:  5'- gCCGcGGCGGC-GcGCCGcaGCCCCcGCa -3'
miRNA:   3'- gGGCaUCGUCGaC-CGGUa-CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 123340 0.66 0.727878
Target:  5'- aCC-UAGCGGCUcgcGGCCGaccagcgccucuaUGCUguCCAGCg -3'
miRNA:   3'- gGGcAUCGUCGA---CCGGU-------------ACGG--GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 37245 0.66 0.727878
Target:  5'- gCgCGUGGaCAGCgcggagaccauccUGGCCgagccGUGCCgCGGCg -3'
miRNA:   3'- -GgGCAUC-GUCG-------------ACCGG-----UACGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 50512 0.66 0.719107
Target:  5'- gCCCagccagcGCAGCagGGCCGucgucuUGCCCgAGCc -3'
miRNA:   3'- -GGGcau----CGUCGa-CCGGU------ACGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 99022 0.66 0.719107
Target:  5'- -gCGgcGCGGC-GGCgCGcGCCCaCAGCa -3'
miRNA:   3'- ggGCauCGUCGaCCG-GUaCGGG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 88842 0.66 0.719107
Target:  5'- gCCCGgcGuCGGCUaccugGGCCGcGCCUC-GCg -3'
miRNA:   3'- -GGGCauC-GUCGA-----CCGGUaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 118388 0.66 0.719107
Target:  5'- gCCCGaGGC-GCUGGCg--GCCgCgGGCg -3'
miRNA:   3'- -GGGCaUCGuCGACCGguaCGG-GgUCG- -5'
23778 3' -59.8 NC_005261.1 + 84140 0.66 0.719107
Target:  5'- gUCGcUGGCGGgcCUcGGCCAcGCCCCuGCc -3'
miRNA:   3'- gGGC-AUCGUC--GA-CCGGUaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 1409 0.66 0.719107
Target:  5'- gCCGcGGCGGCggcgggggcGGCgCccGCCuCCAGCa -3'
miRNA:   3'- gGGCaUCGUCGa--------CCG-GuaCGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 23710 0.66 0.719107
Target:  5'- gCCCGgucggguggcaAGCGGgUGGCCGcGCCgaGGCg -3'
miRNA:   3'- -GGGCa----------UCGUCgACCGGUaCGGggUCG- -5'
23778 3' -59.8 NC_005261.1 + 34345 0.66 0.719107
Target:  5'- gCCGgGGCGGCcgacggGGCCGggcGCCgCgCGGCg -3'
miRNA:   3'- gGGCaUCGUCGa-----CCGGUa--CGG-G-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 87555 0.66 0.719107
Target:  5'- gCUgGgcGuCAGCuUGGCCGUcaGCCCCGcGCc -3'
miRNA:   3'- -GGgCauC-GUCG-ACCGGUA--CGGGGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 63724 0.66 0.719107
Target:  5'- gUCCGUgAGCGGCgUGcGCaugGCCgCGGCg -3'
miRNA:   3'- -GGGCA-UCGUCG-AC-CGguaCGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 103016 0.66 0.712245
Target:  5'- uCCgCGUGGCucucgaagaacgcGCgGGCCGcagggcccagcgccUGUCCCGGCa -3'
miRNA:   3'- -GG-GCAUCGu------------CGaCCGGU--------------ACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4443 0.66 0.709293
Target:  5'- -gCGUcAGCAGCgGGCC---CUCCAGCg -3'
miRNA:   3'- ggGCA-UCGUCGaCCGGuacGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 85090 0.66 0.709293
Target:  5'- --aGUAGCgcagcaccaGGUUGGCCAuguaaaacUGCgCCAGCu -3'
miRNA:   3'- gggCAUCG---------UCGACCGGU--------ACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 6182 0.66 0.709293
Target:  5'- gCCCGccUAGguGCgagGGCg--GgCCCAGCu -3'
miRNA:   3'- -GGGC--AUCguCGa--CCGguaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 121263 0.66 0.709293
Target:  5'- gUCCGccGCAGacggGGCgGccGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGUCga--CCGgUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 33608 0.66 0.709293
Target:  5'- gCCGgcgcgGGCGGCggGGCCcgggggcgcGCCCC-GCa -3'
miRNA:   3'- gGGCa----UCGUCGa-CCGGua-------CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 9801 0.66 0.709293
Target:  5'- gCCCacccCAGCUGGCCcaGC-CCAGCg -3'
miRNA:   3'- -GGGcaucGUCGACCGGuaCGgGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.