miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 123689 0.66 0.709293
Target:  5'- uCCCGgcGCucAGCgugGGCCGcguacucgGCCaUCAGCa -3'
miRNA:   3'- -GGGCauCG--UCGa--CCGGUa-------CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 94681 0.66 0.709293
Target:  5'- cCCUGaGGC-GCUGGCCAccgaggacgUGgCCgAGCu -3'
miRNA:   3'- -GGGCaUCGuCGACCGGU---------ACgGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 85090 0.66 0.709293
Target:  5'- --aGUAGCgcagcaccaGGUUGGCCAuguaaaacUGCgCCAGCu -3'
miRNA:   3'- gggCAUCG---------UCGACCGGU--------ACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 16257 0.66 0.709293
Target:  5'- gCCGgGGCcGCcggGGCCggGCUUCGGCu -3'
miRNA:   3'- gGGCaUCGuCGa--CCGGuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 121263 0.66 0.709293
Target:  5'- gUCCGccGCAGacggGGCgGccGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGUCga--CCGgUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 6182 0.66 0.709293
Target:  5'- gCCCGccUAGguGCgagGGCg--GgCCCAGCu -3'
miRNA:   3'- -GGGC--AUCguCGa--CCGguaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4443 0.66 0.709293
Target:  5'- -gCGUcAGCAGCgGGCC---CUCCAGCg -3'
miRNA:   3'- ggGCA-UCGUCGaCCGGuacGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 130998 0.66 0.709293
Target:  5'- aCCCu--GguGCUGGCCAcgcgcuucuacgUGUUCCAGg -3'
miRNA:   3'- -GGGcauCguCGACCGGU------------ACGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 114977 0.66 0.708308
Target:  5'- aCgCGUcuuuauuGGCgGGCcGGCCGccgcgGCCCCGGCc -3'
miRNA:   3'- -GgGCA-------UCG-UCGaCCGGUa----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 80799 0.66 0.699416
Target:  5'- gCCCGU-GCGGUaGaGCCccGCcgagCCCAGCg -3'
miRNA:   3'- -GGGCAuCGUCGaC-CGGuaCG----GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 32519 0.66 0.699416
Target:  5'- gUCCGc-GCcGCgcccGGCCccgGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGuCGa---CCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 45627 0.66 0.699416
Target:  5'- gCgCGgcGCGGCgGGCCcgcgccggagcaGUGC-CCAGCg -3'
miRNA:   3'- -GgGCauCGUCGaCCGG------------UACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 83752 0.66 0.699416
Target:  5'- --gGUGGCGGCgcgccacGGCCggGUCgCAGCg -3'
miRNA:   3'- gggCAUCGUCGa------CCGGuaCGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 48891 0.66 0.699416
Target:  5'- gCCGaacagccGCAGUUGGCCucuagcgcgaGCCCgGGCg -3'
miRNA:   3'- gGGCau-----CGUCGACCGGua--------CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 52956 0.66 0.699416
Target:  5'- aCUCGgAGCAGCgccGcGCCGgugcgGCgCCGGCa -3'
miRNA:   3'- -GGGCaUCGUCGa--C-CGGUa----CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 33777 0.66 0.699416
Target:  5'- gCCCGcGGCgAGCgcugGGCCccGCgCgGGCg -3'
miRNA:   3'- -GGGCaUCG-UCGa---CCGGuaCGgGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 108905 0.66 0.699416
Target:  5'- gCCGgcgAGCggGGCgcggGGUCggGgCCCAGCa -3'
miRNA:   3'- gGGCa--UCG--UCGa---CCGGuaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 33845 0.66 0.699416
Target:  5'- cCCUGgcGCugGGCgGGCCGggaggGCCCCccGCc -3'
miRNA:   3'- -GGGCauCG--UCGaCCGGUa----CGGGGu-CG- -5'
23778 3' -59.8 NC_005261.1 + 4753 0.66 0.699416
Target:  5'- cCCCGgcucgGGCuugGGcCUGGCUucgGCUUCAGCu -3'
miRNA:   3'- -GGGCa----UCG---UC-GACCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 70874 0.66 0.693463
Target:  5'- gCCGUGGCguGGCcggcggugcacaUGGCCGUGCacuugcgcgccacguCCCGcGCg -3'
miRNA:   3'- gGGCAUCG--UCG------------ACCGGUACG---------------GGGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.