Results 81 - 100 of 272 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23778 | 3' | -59.8 | NC_005261.1 | + | 75524 | 0.67 | 0.666477 |
Target: 5'- gCCGUggucgccgcgcugcAGCGGCUgcgcguccugccGGCCAU-CCCCGGg -3' miRNA: 3'- gGGCA--------------UCGUCGA------------CCGGUAcGGGGUCg -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 90374 | 0.67 | 0.666477 |
Target: 5'- gCUCGUGcGCGGCgaGGCCccGCcggcggggcuggcgCCCGGCg -3' miRNA: 3'- -GGGCAU-CGUCGa-CCGGuaCG--------------GGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 103692 | 0.67 | 0.659443 |
Target: 5'- gCCCGUuuaUAGC-GGCCAcGUcaCCCAGCa -3' miRNA: 3'- -GGGCAuc-GUCGaCCGGUaCG--GGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 68278 | 0.67 | 0.659443 |
Target: 5'- gCCCGc-GCGGCggGGCCccgGCCgCgGGCg -3' miRNA: 3'- -GGGCauCGUCGa-CCGGua-CGG-GgUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 65818 | 0.67 | 0.659443 |
Target: 5'- gCCCG-GGCGGC-GGCgCGaagcUGCCCgAGUg -3' miRNA: 3'- -GGGCaUCGUCGaCCG-GU----ACGGGgUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 36868 | 0.67 | 0.659443 |
Target: 5'- gCCCGccccGCAcGCUGGCCcgcGCCCUuccucgccaaGGCg -3' miRNA: 3'- -GGGCau--CGU-CGACCGGua-CGGGG----------UCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 118599 | 0.67 | 0.659443 |
Target: 5'- gCCGcggAGCucgcGCUgucGGCCGuUGCCCUGGCc -3' miRNA: 3'- gGGCa--UCGu---CGA---CCGGU-ACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 4082 | 0.67 | 0.659443 |
Target: 5'- aCCGgcGGCAGCgGcGCCGUcacGCuCCCGGUg -3' miRNA: 3'- gGGCa-UCGUCGaC-CGGUA---CG-GGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 10473 | 0.67 | 0.659443 |
Target: 5'- gCCCG-AGCAgGCcGGCCcgcUGCaCCGGCu -3' miRNA: 3'- -GGGCaUCGU-CGaCCGGu--ACGgGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 107888 | 0.67 | 0.658436 |
Target: 5'- gCCCGcGGCccGCUuguccgcGGCCGcgGCCUCGGCc -3' miRNA: 3'- -GGGCaUCGu-CGA-------CCGGUa-CGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 88757 | 0.67 | 0.65743 |
Target: 5'- gCCaugGUGGCGGCgcugcgcuccucGGCCcugGCCgCCGGCg -3' miRNA: 3'- -GGg--CAUCGUCGa-----------CCGGua-CGG-GGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 76729 | 0.67 | 0.649375 |
Target: 5'- gCCC---GCAGCUGGCCGacgUGCUCgCGGa -3' miRNA: 3'- -GGGcauCGUCGACCGGU---ACGGG-GUCg -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 104514 | 0.67 | 0.649375 |
Target: 5'- cUCCGUGGCGGCcgcgacggcGGCC--GCCaCCAGg -3' miRNA: 3'- -GGGCAUCGUCGa--------CCGGuaCGG-GGUCg -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 36781 | 0.67 | 0.649375 |
Target: 5'- gCCCGUGcguuGCGccgagacuuugcGCcGGCCggcgcuacGUGCCCCGGUa -3' miRNA: 3'- -GGGCAU----CGU------------CGaCCGG--------UACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 131176 | 0.67 | 0.649375 |
Target: 5'- gCUGccGCAGC-GGCUAcGCCCgCGGCg -3' miRNA: 3'- gGGCauCGUCGaCCGGUaCGGG-GUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 31276 | 0.67 | 0.649375 |
Target: 5'- cCCCGaGGC-GCUGGCCGagaucgcgGCCCgCcGCc -3' miRNA: 3'- -GGGCaUCGuCGACCGGUa-------CGGG-GuCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 32310 | 0.67 | 0.649375 |
Target: 5'- cCCCGccGCcGCcgcGGCCGcgGCgCCCGGCg -3' miRNA: 3'- -GGGCauCGuCGa--CCGGUa-CG-GGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 71239 | 0.67 | 0.649375 |
Target: 5'- gCCCucGGCGGCgcaGCCGaGCCCCGcGCc -3' miRNA: 3'- -GGGcaUCGUCGac-CGGUaCGGGGU-CG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 22641 | 0.67 | 0.648368 |
Target: 5'- uCCCGUcccuagacgcgcuGGCGGCgccugGGCgGcGCCCgAGUg -3' miRNA: 3'- -GGGCA-------------UCGUCGa----CCGgUaCGGGgUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 39791 | 0.67 | 0.639295 |
Target: 5'- gCCGgggGGCGGCgcGGCCGccgGCgCCAGg -3' miRNA: 3'- gGGCa--UCGUCGa-CCGGUa--CGgGGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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