miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 635 0.67 0.669488
Target:  5'- -aUGUGGCGGC-GGCCGccagcgccgcGuCCCCGGCg -3'
miRNA:   3'- ggGCAUCGUCGaCCGGUa---------C-GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 966 0.69 0.510298
Target:  5'- gCCCGUagAGCGGCgGGCCGcGCgCagAGCg -3'
miRNA:   3'- -GGGCA--UCGUCGaCCGGUaCGgGg-UCG- -5'
23778 3' -59.8 NC_005261.1 + 1066 0.69 0.559066
Target:  5'- -gCGcgGGgGGCUGGCCccGCUCCAGg -3'
miRNA:   3'- ggGCa-UCgUCGACCGGuaCGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 1176 0.66 0.709293
Target:  5'- gCCCGcgccGCGGCcggGGCCggGgCCgGGCg -3'
miRNA:   3'- -GGGCau--CGUCGa--CCGGuaCgGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 1303 0.67 0.639295
Target:  5'- uCCCGUcgccGGCGGC-GGCaCGcGCUCCGGg -3'
miRNA:   3'- -GGGCA----UCGUCGaCCG-GUaCGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 1409 0.66 0.719107
Target:  5'- gCCGcGGCGGCggcgggggcGGCgCccGCCuCCAGCa -3'
miRNA:   3'- gGGCaUCGUCGa--------CCG-GuaCGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 1502 0.67 0.639295
Target:  5'- gCCgCGgccGGCAGCUcgucggGcGCCA-GCUCCAGCg -3'
miRNA:   3'- -GG-GCa--UCGUCGA------C-CGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 1566 0.7 0.454285
Target:  5'- gCCGcAGCGGC-GcGCCGaGcCCCCAGCg -3'
miRNA:   3'- gGGCaUCGUCGaC-CGGUaC-GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 1641 0.66 0.732723
Target:  5'- cCCCG-AGCcccAGCgccgcgcucugcgcGGCCAUGUCCUuGCg -3'
miRNA:   3'- -GGGCaUCG---UCGa-------------CCGGUACGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 2418 0.67 0.629209
Target:  5'- cCCCGcgcGGCGGCgGGCCGcGaUCUCGGCc -3'
miRNA:   3'- -GGGCa--UCGUCGaCCGGUaC-GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 2607 0.7 0.472601
Target:  5'- gCCGUcGGCGGCggGGCCGccggGCggcauggggCCCAGCa -3'
miRNA:   3'- gGGCA-UCGUCGa-CCGGUa---CG---------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 2684 0.7 0.485641
Target:  5'- aCCCG--GCGGCgcgccggcuuuUGGCCGgcgccgggccccugGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGUCG-----------ACCGGUa-------------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 2757 0.68 0.619125
Target:  5'- gCCGUcGCGGCgGGCCucgaggcccGCCCCcgaggGGCu -3'
miRNA:   3'- gGGCAuCGUCGaCCGGua-------CGGGG-----UCG- -5'
23778 3' -59.8 NC_005261.1 + 2796 0.76 0.202054
Target:  5'- gCCGccGGCGGCcgggaggGGCCGggcgGCCCCAGCc -3'
miRNA:   3'- gGGCa-UCGUCGa------CCGGUa---CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 2830 0.7 0.463396
Target:  5'- nCCCGagcucgGGCGGCagGGCCGgcgGCCCCcuCg -3'
miRNA:   3'- -GGGCa-----UCGUCGa-CCGGUa--CGGGGucG- -5'
23778 3' -59.8 NC_005261.1 + 3835 0.67 0.639295
Target:  5'- gCCCG-GGC-GCUGGCggCAgcgGCgCCGGCg -3'
miRNA:   3'- -GGGCaUCGuCGACCG--GUa--CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4000 0.69 0.559066
Target:  5'- gUCGUAGCGGCggcucaUGGCCAcgcagGCCgCCAcguGCg -3'
miRNA:   3'- gGGCAUCGUCG------ACCGGUa----CGG-GGU---CG- -5'
23778 3' -59.8 NC_005261.1 + 4082 0.67 0.659443
Target:  5'- aCCGgcGGCAGCgGcGCCGUcacGCuCCCGGUg -3'
miRNA:   3'- gGGCa-UCGUCGaC-CGGUA---CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4443 0.66 0.709293
Target:  5'- -gCGUcAGCAGCgGGCC---CUCCAGCg -3'
miRNA:   3'- ggGCA-UCGUCGaCCGGuacGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4753 0.66 0.699416
Target:  5'- cCCCGgcucgGGCuugGGcCUGGCUucgGCUUCAGCu -3'
miRNA:   3'- -GGGCa----UCG---UC-GACCGGua-CGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.