miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 5510 0.7 0.472601
Target:  5'- gCCGcGGCAGCggcGGCgAgGCCgCCGGCu -3'
miRNA:   3'- gGGCaUCGUCGa--CCGgUaCGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 6182 0.66 0.709293
Target:  5'- gCCCGccUAGguGCgagGGCg--GgCCCAGCu -3'
miRNA:   3'- -GGGC--AUCguCGa--CCGguaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 7864 0.69 0.558077
Target:  5'- gCCGUuuuuuuguuucagGGCAGCgagcGGCUcUGUUCCGGCg -3'
miRNA:   3'- gGGCA-------------UCGUCGa---CCGGuACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 9801 0.66 0.709293
Target:  5'- gCCCacccCAGCUGGCCcaGC-CCAGCg -3'
miRNA:   3'- -GGGcaucGUCGACCGGuaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 9858 0.78 0.165781
Target:  5'- gCCCGcccCAGCcGGCC-UGCCCCGGCg -3'
miRNA:   3'- -GGGCaucGUCGaCCGGuACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 9915 0.78 0.165781
Target:  5'- gCCCGcccCAGCcGGCC-UGCCCCGGCg -3'
miRNA:   3'- -GGGCaucGUCGaCCGGuACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 10473 0.67 0.659443
Target:  5'- gCCCG-AGCAgGCcGGCCcgcUGCaCCGGCu -3'
miRNA:   3'- -GGGCaUCGU-CGaCCGGu--ACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 10527 0.68 0.609051
Target:  5'- cCCCGcGGCGcGCUcGCUGUcGcCCCCGGCg -3'
miRNA:   3'- -GGGCaUCGU-CGAcCGGUA-C-GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 11947 0.71 0.427553
Target:  5'- gCCGcGGCGGCUcgcccGGCgCGcGCUCCAGCg -3'
miRNA:   3'- gGGCaUCGUCGA-----CCG-GUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 12089 0.66 0.709293
Target:  5'- gCCGgGGCGGCUcaaaGGCgCG-GCgCCAGCu -3'
miRNA:   3'- gGGCaUCGUCGA----CCG-GUaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 12140 0.69 0.529614
Target:  5'- gCCGccGCGGC-GGCCGcgcagGCCCCAaGCc -3'
miRNA:   3'- gGGCauCGUCGaCCGGUa----CGGGGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 12638 0.66 0.689483
Target:  5'- gUCCGgcGCGGUcuggGGCC--GCgCCGGCg -3'
miRNA:   3'- -GGGCauCGUCGa---CCGGuaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 12710 0.71 0.427553
Target:  5'- gCCCG-AGCGGCUcgggcgcgcgGGCCcgccgGCCCCcugGGCg -3'
miRNA:   3'- -GGGCaUCGUCGA----------CCGGua---CGGGG---UCG- -5'
23778 3' -59.8 NC_005261.1 + 13086 0.69 0.510298
Target:  5'- gCCCGUcggcgGGCGGCgGGCUcgGCUCgGGg -3'
miRNA:   3'- -GGGCA-----UCGUCGaCCGGuaCGGGgUCg -5'
23778 3' -59.8 NC_005261.1 + 14239 0.69 0.559066
Target:  5'- aCCGcgcCGGCcggGGCCuuUGCCCCGGUg -3'
miRNA:   3'- gGGCaucGUCGa--CCGGu-ACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 15172 0.66 0.738509
Target:  5'- -gCGUAGCGGC-GGCgGcGCCCgCGGg -3'
miRNA:   3'- ggGCAUCGUCGaCCGgUaCGGG-GUCg -5'
23778 3' -59.8 NC_005261.1 + 15246 0.76 0.22266
Target:  5'- cCCCGcucGCAGUgGGCCGcgaucGCCCCGGCg -3'
miRNA:   3'- -GGGCau-CGUCGaCCGGUa----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 15637 0.68 0.588959
Target:  5'- uCCCGUuGUAGCgccgcccGGCCGggagcuggUGCUCCAGg -3'
miRNA:   3'- -GGGCAuCGUCGa------CCGGU--------ACGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 15915 0.72 0.361074
Target:  5'- cCCCGc-GCAGCcggGGCCGgggccgggGCCCgGGCa -3'
miRNA:   3'- -GGGCauCGUCGa--CCGGUa-------CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 16257 0.66 0.709293
Target:  5'- gCCGgGGCcGCcggGGCCggGCUUCGGCu -3'
miRNA:   3'- gGGCaUCGuCGa--CCGGuaCGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.