miRNA display CGI


Results 41 - 60 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 17309 0.69 0.549192
Target:  5'- aCCCGgccggggucGCGGCccGGCCcgGC-CCAGCu -3'
miRNA:   3'- -GGGCau-------CGUCGa-CCGGuaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 19387 0.7 0.491282
Target:  5'- gCCGUAGUAGCggGGCuCGgugaucgGCCCguGUg -3'
miRNA:   3'- gGGCAUCGUCGa-CCG-GUa------CGGGguCG- -5'
23778 3' -59.8 NC_005261.1 + 19875 0.67 0.669488
Target:  5'- cCCCGc--CGGCgGGCCcgucgucGCCCCAGUc -3'
miRNA:   3'- -GGGCaucGUCGaCCGGua-----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 20021 0.66 0.728849
Target:  5'- aCCCGUccgcGGuCAGCgGGCCGguuCCguCCGGCg -3'
miRNA:   3'- -GGGCA----UC-GUCGaCCGGUac-GG--GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 20129 0.68 0.608044
Target:  5'- gCCCGcAGCGGCUccgcgagcgcucaGGCC--GCgCCGGCu -3'
miRNA:   3'- -GGGCaUCGUCGA-------------CCGGuaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 20556 0.69 0.539373
Target:  5'- -aCGUGGCGGCgGGCUgcgcagcgGCgCCGGCg -3'
miRNA:   3'- ggGCAUCGUCGaCCGGua------CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 20855 0.69 0.53351
Target:  5'- -gCGUGGCGGCUcuugcgccgcgggccGGCCAU-CgCCAGCu -3'
miRNA:   3'- ggGCAUCGUCGA---------------CCGGUAcGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 20923 0.74 0.301453
Target:  5'- cCCCG-AGCuGCUGGCCAgcgGCauccuccUCCGGCu -3'
miRNA:   3'- -GGGCaUCGuCGACCGGUa--CG-------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 21184 0.68 0.619125
Target:  5'- gCCGcUGGCgcgAGCgcGGCCGcggacgcugGCCCCGGCc -3'
miRNA:   3'- gGGC-AUCG---UCGa-CCGGUa--------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 21234 0.66 0.738509
Target:  5'- gCCCGUcggcuGGCGGCUuuucaGGgCGUGCCgCAacgaGCa -3'
miRNA:   3'- -GGGCA-----UCGUCGA-----CCgGUACGGgGU----CG- -5'
23778 3' -59.8 NC_005261.1 + 21795 0.7 0.454285
Target:  5'- gCCGccGCAGCcgccggccgGGCCggGCCCgCGGCg -3'
miRNA:   3'- gGGCauCGUCGa--------CCGGuaCGGG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 22641 0.67 0.648368
Target:  5'- uCCCGUcccuagacgcgcuGGCGGCgccugGGCgGcGCCCgAGUg -3'
miRNA:   3'- -GGGCA-------------UCGUCGa----CCGgUaCGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 23235 0.7 0.463396
Target:  5'- gCCgGU-GCAGCgGGCCGgccUGCUCgGGCg -3'
miRNA:   3'- -GGgCAuCGUCGaCCGGU---ACGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 23472 0.69 0.519921
Target:  5'- gCCCGcGGCGGCgagugcgcgGGCCc-GCCUgGGCa -3'
miRNA:   3'- -GGGCaUCGUCGa--------CCGGuaCGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 23557 0.69 0.529614
Target:  5'- gCCGUcgcagguggGGCagGGCUGGCCGUGgCUCAugGCg -3'
miRNA:   3'- gGGCA---------UCG--UCGACCGGUACgGGGU--CG- -5'
23778 3' -59.8 NC_005261.1 + 23710 0.66 0.719107
Target:  5'- gCCCGgucggguggcaAGCGGgUGGCCGcGCCgaGGCg -3'
miRNA:   3'- -GGGCa----------UCGUCgACCGGUaCGGggUCG- -5'
23778 3' -59.8 NC_005261.1 + 23749 0.68 0.598993
Target:  5'- gUCCGggAGgGGCgGGCU-UGCCCCGGg -3'
miRNA:   3'- -GGGCa-UCgUCGaCCGGuACGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 23807 0.66 0.738509
Target:  5'- gCCGgcuGgGGCgGGCU-UGCCCCGGg -3'
miRNA:   3'- gGGCau-CgUCGaCCGGuACGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 23864 0.66 0.738509
Target:  5'- gCCGgcuGgGGCgGGCU-UGCCCCGGg -3'
miRNA:   3'- gGGCau-CgUCGaCCGGuACGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 24550 0.7 0.454285
Target:  5'- aCCUGgccgGGCGGC--GCCAgGUCCCAGCc -3'
miRNA:   3'- -GGGCa---UCGUCGacCGGUaCGGGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.