miRNA display CGI


Results 61 - 80 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 28206 0.68 0.609051
Target:  5'- cCUCGccGCcGCU-GCCGcgGCCCCAGCu -3'
miRNA:   3'- -GGGCauCGuCGAcCGGUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 28431 0.72 0.385147
Target:  5'- aCCCGcgcgcaccGCGGCcGGCCAUGgcgucUCCCGGCg -3'
miRNA:   3'- -GGGCau------CGUCGaCCGGUAC-----GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 29158 0.67 0.669488
Target:  5'- gCCCGcGGaucCAGCcaaGGCCAgGgCCCGGCg -3'
miRNA:   3'- -GGGCaUC---GUCGa--CCGGUaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 29552 0.76 0.212142
Target:  5'- gCCCGgaccuGCAGCUGGCgCGccUGCUgCAGCg -3'
miRNA:   3'- -GGGCau---CGUCGACCG-GU--ACGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 29699 0.68 0.588959
Target:  5'- -aCGUGGCGGCcugcgUGGCCAUgaGCCgCC-GCu -3'
miRNA:   3'- ggGCAUCGUCG-----ACCGGUA--CGG-GGuCG- -5'
23778 3' -59.8 NC_005261.1 + 29851 0.68 0.56899
Target:  5'- gCCGUGcucgccggccgcGCGGCgccgGcGCCGcUGCCgCCAGCg -3'
miRNA:   3'- gGGCAU------------CGUCGa---C-CGGU-ACGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 30028 0.69 0.510298
Target:  5'- uCUCGgcuGCAGCgGGCCGcgGCCugCCGGCc -3'
miRNA:   3'- -GGGCau-CGUCGaCCGGUa-CGG--GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 30332 0.71 0.445273
Target:  5'- gCCGgcGCGGCUggcGGCCGcGCUCgCGGCc -3'
miRNA:   3'- gGGCauCGUCGA---CCGGUaCGGG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 30719 0.72 0.368981
Target:  5'- cCCCGgcGCcgGGCcgccaGGCCcgaGCCCCAGCc -3'
miRNA:   3'- -GGGCauCG--UCGa----CCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 30894 0.68 0.582953
Target:  5'- gCCCG-AGCucgGGCUGGggccgcccggccccuCCcgGCCgCCGGCg -3'
miRNA:   3'- -GGGCaUCG---UCGACC---------------GGuaCGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 31078 0.7 0.463396
Target:  5'- gCCCGcccGCGuGCUGGgccCCAUGCcgCCCGGCg -3'
miRNA:   3'- -GGGCau-CGU-CGACC---GGUACG--GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 31276 0.67 0.649375
Target:  5'- cCCCGaGGC-GCUGGCCGagaucgcgGCCCgCcGCc -3'
miRNA:   3'- -GGGCaUCGuCGACCGGUa-------CGGG-GuCG- -5'
23778 3' -59.8 NC_005261.1 + 31426 0.68 0.588959
Target:  5'- gCCCGgggaGGC-GCUGGCgGcGCcgCCCGGCg -3'
miRNA:   3'- -GGGCa---UCGuCGACCGgUaCG--GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 31667 0.67 0.669488
Target:  5'- cUCUGccuGCGGCUGGCCGcGgCgCGGCg -3'
miRNA:   3'- -GGGCau-CGUCGACCGGUaCgGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 31918 0.68 0.609051
Target:  5'- cCCCGgGGCGccgccGCUgGGCUcUGCCgCGGCg -3'
miRNA:   3'- -GGGCaUCGU-----CGA-CCGGuACGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 32310 0.67 0.649375
Target:  5'- cCCCGccGCcGCcgcGGCCGcgGCgCCCGGCg -3'
miRNA:   3'- -GGGCauCGuCGa--CCGGUa-CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 32519 0.66 0.699416
Target:  5'- gUCCGc-GCcGCgcccGGCCccgGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGuCGa---CCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 33608 0.66 0.709293
Target:  5'- gCCGgcgcgGGCGGCggGGCCcgggggcgcGCCCC-GCa -3'
miRNA:   3'- gGGCa----UCGUCGa-CCGGua-------CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 33710 0.7 0.463396
Target:  5'- gCCCGcugcacgaggGGCGGUgggGGCC-UGCCCCucGCg -3'
miRNA:   3'- -GGGCa---------UCGUCGa--CCGGuACGGGGu-CG- -5'
23778 3' -59.8 NC_005261.1 + 33777 0.66 0.699416
Target:  5'- gCCCGcGGCgAGCgcugGGCCccGCgCgGGCg -3'
miRNA:   3'- -GGGCaUCG-UCGa---CCGGuaCGgGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.