miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 33845 0.66 0.699416
Target:  5'- cCCUGgcGCugGGCgGGCCGggaggGCCCCccGCc -3'
miRNA:   3'- -GGGCauCG--UCGaCCGGUa----CGGGGu-CG- -5'
23778 3' -59.8 NC_005261.1 + 34345 0.66 0.719107
Target:  5'- gCCGgGGCGGCcgacggGGCCGggcGCCgCgCGGCg -3'
miRNA:   3'- gGGCaUCGUCGa-----CCGGUa--CGG-G-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 35213 0.67 0.669488
Target:  5'- gCCgggaGUGGCGGCUGGagggGaCCCGGCa -3'
miRNA:   3'- -GGg---CAUCGUCGACCgguaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 35612 0.71 0.427553
Target:  5'- cCCCGccGCGGCa-GCCGUuucugcccaaGCCCCAGCc -3'
miRNA:   3'- -GGGCauCGUCGacCGGUA----------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 35700 0.7 0.481898
Target:  5'- cCCCGgugGGCcgggGGCUcGGUgGcgGCCCCGGCc -3'
miRNA:   3'- -GGGCa--UCG----UCGA-CCGgUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 35910 0.7 0.46248
Target:  5'- gCCGcGGCAGCgcGGCCccGCgccgcagCCCAGCg -3'
miRNA:   3'- gGGCaUCGUCGa-CCGGuaCG-------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 35981 0.67 0.669488
Target:  5'- gCUGUAGCGGC-GGCg--GCuCCUGGCg -3'
miRNA:   3'- gGGCAUCGUCGaCCGguaCG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 36356 0.66 0.689483
Target:  5'- gCCgCGgaggggggAGCGGauCUGGCaCggGCCCCAGUc -3'
miRNA:   3'- -GG-GCa-------UCGUC--GACCG-GuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 36598 0.69 0.559066
Target:  5'- aCCGggggggGGCAGCgcuCCugcGCCCCGGCg -3'
miRNA:   3'- gGGCa-----UCGUCGaccGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 36728 0.67 0.635261
Target:  5'- aCCCGggaccGCGGCggucagcuacccaGGCCAgcuggcGCCCCuGCa -3'
miRNA:   3'- -GGGCau---CGUCGa------------CCGGUa-----CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 36781 0.67 0.649375
Target:  5'- gCCCGUGcguuGCGccgagacuuugcGCcGGCCggcgcuacGUGCCCCGGUa -3'
miRNA:   3'- -GGGCAU----CGU------------CGaCCGG--------UACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 36868 0.67 0.659443
Target:  5'- gCCCGccccGCAcGCUGGCCcgcGCCCUuccucgccaaGGCg -3'
miRNA:   3'- -GGGCau--CGU-CGACCGGua-CGGGG----------UCG- -5'
23778 3' -59.8 NC_005261.1 + 37245 0.66 0.727878
Target:  5'- gCgCGUGGaCAGCgcggagaccauccUGGCCgagccGUGCCgCGGCg -3'
miRNA:   3'- -GgGCAUC-GUCG-------------ACCGG-----UACGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 37636 0.67 0.668485
Target:  5'- gCC-UAGCGGCgcccccaagcccuUGGCCuugGCCCCcgAGCc -3'
miRNA:   3'- gGGcAUCGUCG-------------ACCGGua-CGGGG--UCG- -5'
23778 3' -59.8 NC_005261.1 + 37888 0.79 0.132051
Target:  5'- gCUGgAGCccgAGCUGGCCAUGCCCUAcGCg -3'
miRNA:   3'- gGGCaUCG---UCGACCGGUACGGGGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 38680 0.68 0.578956
Target:  5'- gCCCGccAGUcucgcGCUGGCCggGCCCaAGCc -3'
miRNA:   3'- -GGGCa-UCGu----CGACCGGuaCGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 39195 0.67 0.629209
Target:  5'- cCCCGgcgAGCAGCcGcaccgguagccGCCAUgGCCCUcGCg -3'
miRNA:   3'- -GGGCa--UCGUCGaC-----------CGGUA-CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 39394 0.73 0.338069
Target:  5'- gCCC-UGGCGGCgacCCGaGCCCCAGCg -3'
miRNA:   3'- -GGGcAUCGUCGaccGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 39791 0.67 0.639295
Target:  5'- gCCGgggGGCGGCgcGGCCGccgGCgCCAGg -3'
miRNA:   3'- gGGCa--UCGUCGa-CCGGUa--CGgGGUCg -5'
23778 3' -59.8 NC_005261.1 + 42347 0.68 0.59598
Target:  5'- uCCUGgaugcugGGCgGGCUGGCCGcgcaaacguacuggUGCcggCCCAGCu -3'
miRNA:   3'- -GGGCa------UCG-UCGACCGGU--------------ACG---GGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.