miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 42667 0.67 0.679505
Target:  5'- gCCa-AGCGGC-GGCCGggccGCCgCCGGCa -3'
miRNA:   3'- gGGcaUCGUCGaCCGGUa---CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 43432 0.68 0.598993
Target:  5'- gCCGgcgGGgAGCUGGCUcgGCgCCUGGa -3'
miRNA:   3'- gGGCa--UCgUCGACCGGuaCG-GGGUCg -5'
23778 3' -59.8 NC_005261.1 + 43570 0.66 0.709293
Target:  5'- uUCCGcgAGCGGCgcuucGCCGUGCgcgacgccgucUCCGGCg -3'
miRNA:   3'- -GGGCa-UCGUCGac---CGGUACG-----------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 44220 0.7 0.472601
Target:  5'- gCCCGggAGCGcgcgcuGCUGGCCG---CCCAGCg -3'
miRNA:   3'- -GGGCa-UCGU------CGACCGGUacgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 44285 0.7 0.4998
Target:  5'- gCCCGccgccAGCGGCgGGCCAgggccgcUGCCCgCGGg -3'
miRNA:   3'- -GGGCa----UCGUCGaCCGGU-------ACGGG-GUCg -5'
23778 3' -59.8 NC_005261.1 + 45287 0.72 0.393404
Target:  5'- gCCGUAcCGGCUGGCCuuguaccGCCCCGa- -3'
miRNA:   3'- gGGCAUcGUCGACCGGua-----CGGGGUcg -5'
23778 3' -59.8 NC_005261.1 + 45391 0.69 0.549192
Target:  5'- cCCUGUucguGCAGCU-GUCGUGCCUgcugCGGCg -3'
miRNA:   3'- -GGGCAu---CGUCGAcCGGUACGGG----GUCG- -5'
23778 3' -59.8 NC_005261.1 + 45627 0.66 0.699416
Target:  5'- gCgCGgcGCGGCgGGCCcgcgccggagcaGUGC-CCAGCg -3'
miRNA:   3'- -GgGCauCGUCGaCCGG------------UACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 46253 0.68 0.609051
Target:  5'- gCCGcGGCGGC-GGCCGcgaccgUGUCCCcggGGCg -3'
miRNA:   3'- gGGCaUCGUCGaCCGGU------ACGGGG---UCG- -5'
23778 3' -59.8 NC_005261.1 + 46318 0.7 0.472601
Target:  5'- cCCCGcgaGGCuGCgcuUGGCCAUGCgCCCAa- -3'
miRNA:   3'- -GGGCa--UCGuCG---ACCGGUACG-GGGUcg -5'
23778 3' -59.8 NC_005261.1 + 47704 0.66 0.728849
Target:  5'- gCCgCGUcGGCGGCgucgggGGCCu--CCUCGGCg -3'
miRNA:   3'- -GG-GCA-UCGUCGa-----CCGGuacGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 47846 0.68 0.619125
Target:  5'- uCCaCGUcGCGGCgUGGCCGaGCguagCCAGCg -3'
miRNA:   3'- -GG-GCAuCGUCG-ACCGGUaCGg---GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 48842 0.68 0.619125
Target:  5'- cCCCGccgccgcGCAGCaGGCCcagcGCCCgGGCc -3'
miRNA:   3'- -GGGCau-----CGUCGaCCGGua--CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 48891 0.66 0.699416
Target:  5'- gCCGaacagccGCAGUUGGCCucuagcgcgaGCCCgGGCg -3'
miRNA:   3'- gGGCau-----CGUCGACCGGua--------CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 49203 0.72 0.385147
Target:  5'- gCCGacagcgagGGCGGgaGGCCG-GCgCCCAGCg -3'
miRNA:   3'- gGGCa-------UCGUCgaCCGGUaCG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 50512 0.66 0.719107
Target:  5'- gCCCagccagcGCAGCagGGCCGucgucuUGCCCgAGCc -3'
miRNA:   3'- -GGGcau----CGUCGa-CCGGU------ACGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 50783 0.77 0.178644
Target:  5'- aCCGcGGCGGC-GGCC--GCCCCGGCg -3'
miRNA:   3'- gGGCaUCGUCGaCCGGuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 51746 0.7 0.50075
Target:  5'- cCCCGggcuGCcGCUGGCCGUGaagCUGGCg -3'
miRNA:   3'- -GGGCau--CGuCGACCGGUACgg-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 51790 0.69 0.559066
Target:  5'- cCCUGcUGGCcG-UGGCCAUGCUCguGCu -3'
miRNA:   3'- -GGGC-AUCGuCgACCGGUACGGGguCG- -5'
23778 3' -59.8 NC_005261.1 + 51911 0.67 0.683501
Target:  5'- gCCCGggcgcGCAGC-GGCCGcgGCCuggucccgcucgucgCCGGCg -3'
miRNA:   3'- -GGGCau---CGUCGaCCGGUa-CGG---------------GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.