miRNA display CGI


Results 121 - 140 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 52956 0.66 0.699416
Target:  5'- aCUCGgAGCAGCgccGcGCCGgugcgGCgCCGGCa -3'
miRNA:   3'- -GGGCaUCGUCGa--C-CGGUa----CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 53353 0.71 0.445273
Target:  5'- cCCCGccGC-GCUuucGGCCGccGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGuCGA---CCGGUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 53560 0.75 0.243287
Target:  5'- gCCGcggcccaggcgcacUAGCGGCcgcgGGCCGgcggcGCCCCAGCg -3'
miRNA:   3'- gGGC--------------AUCGUCGa---CCGGUa----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 55026 0.68 0.619125
Target:  5'- uCCCGUAGCcGCcGGCCccGCg-CAGCu -3'
miRNA:   3'- -GGGCAUCGuCGaCCGGuaCGggGUCG- -5'
23778 3' -59.8 NC_005261.1 + 55350 0.68 0.578956
Target:  5'- uCCCGgaaAGCAGC-GGCa--GgCCCAGCc -3'
miRNA:   3'- -GGGCa--UCGUCGaCCGguaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 56796 0.69 0.529614
Target:  5'- gCCCacuuccGGCAGCgGGCCAcgguguuccuggUGCCgCGGCg -3'
miRNA:   3'- -GGGca----UCGUCGaCCGGU------------ACGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 58230 0.73 0.338069
Target:  5'- gCCCGcGGCGGCgggguccucGGCCAUGCCgCGccGCg -3'
miRNA:   3'- -GGGCaUCGUCGa--------CCGGUACGGgGU--CG- -5'
23778 3' -59.8 NC_005261.1 + 58943 0.71 0.410257
Target:  5'- gCCCGgaAGC-GCUcGGCCAgcagcGCCUCGGCg -3'
miRNA:   3'- -GGGCa-UCGuCGA-CCGGUa----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 59154 0.7 0.481898
Target:  5'- cCCCG-GGCGcGC-GGCgCccGCCCCAGCc -3'
miRNA:   3'- -GGGCaUCGU-CGaCCG-GuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 59470 0.67 0.679505
Target:  5'- gUCGgggGGCAGCgccggcgcGGCCGccGCgCCAGCg -3'
miRNA:   3'- gGGCa--UCGUCGa-------CCGGUa-CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 60707 0.7 0.454285
Target:  5'- gCgCGUGGCGGCgcacGGCgGUGCCaCC-GCg -3'
miRNA:   3'- -GgGCAUCGUCGa---CCGgUACGG-GGuCG- -5'
23778 3' -59.8 NC_005261.1 + 60918 0.7 0.454285
Target:  5'- aCCGgcccuccacGGCGGCgacccgcgGGCCGUgGCCCgAGCg -3'
miRNA:   3'- gGGCa--------UCGUCGa-------CCGGUA-CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 61038 0.7 0.472601
Target:  5'- aCCGcGGCAGCUGGCUGgugcuggGCCUgGaGCa -3'
miRNA:   3'- gGGCaUCGUCGACCGGUa------CGGGgU-CG- -5'
23778 3' -59.8 NC_005261.1 + 61124 0.71 0.444377
Target:  5'- gCCGUGcGCuGCuucgcgcaagucaUGGCCGUGCaCCGGCg -3'
miRNA:   3'- gGGCAU-CGuCG-------------ACCGGUACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 62032 0.69 0.549192
Target:  5'- gCCGUccucccGCGGCUcGGCCG-GCUCCAGg -3'
miRNA:   3'- gGGCAu-----CGUCGA-CCGGUaCGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 62426 0.69 0.529614
Target:  5'- gCCGaGGcCAGCgcgaGCCGgucgccggGCCCCAGCa -3'
miRNA:   3'- gGGCaUC-GUCGac--CGGUa-------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 62600 0.69 0.510298
Target:  5'- gCCGggaaccGGCAGCgguaggcGGCCAUcaGCgCCAGCg -3'
miRNA:   3'- gGGCa-----UCGUCGa------CCGGUA--CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 62700 0.68 0.588959
Target:  5'- gCCGgcGCAGCgUGGCgAggaacaccaccuUGCCCUcGCa -3'
miRNA:   3'- gGGCauCGUCG-ACCGgU------------ACGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 63585 0.74 0.269227
Target:  5'- gCCCGaagAGCGGCgcggggcccugUGGCCGgaugcgGCuCCCAGCg -3'
miRNA:   3'- -GGGCa--UCGUCG-----------ACCGGUa-----CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 63724 0.66 0.719107
Target:  5'- gUCCGUgAGCGGCgUGcGCaugGCCgCGGCg -3'
miRNA:   3'- -GGGCA-UCGUCG-AC-CGguaCGGgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.