miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 112681 0.68 0.598993
Target:  5'- gCgCG-AGgGGCUgggcgucgaGGCCGUGCCCguGCa -3'
miRNA:   3'- -GgGCaUCgUCGA---------CCGGUACGGGguCG- -5'
23778 3' -59.8 NC_005261.1 + 109865 0.68 0.567001
Target:  5'- uCCUGggGGCAGCggGGCCcgcgggcgggcGCCCCGGg -3'
miRNA:   3'- -GGGCa-UCGUCGa-CCGGua---------CGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 109634 0.66 0.689483
Target:  5'- ----aGGCGGCUugcGGCCGccGCCCCAGa -3'
miRNA:   3'- gggcaUCGUCGA---CCGGUa-CGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 108905 0.66 0.699416
Target:  5'- gCCGgcgAGCggGGCgcggGGUCggGgCCCAGCa -3'
miRNA:   3'- gGGCa--UCG--UCGa---CCGGuaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 108195 0.66 0.689483
Target:  5'- uCCgGgcGCgagAGCUGcGCCAgcacggcgcGCUCCAGCa -3'
miRNA:   3'- -GGgCauCG---UCGAC-CGGUa--------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 107954 0.7 0.463396
Target:  5'- gUCCGUGcGCGGCcgcggGGCCAUGCagUGGCg -3'
miRNA:   3'- -GGGCAU-CGUCGa----CCGGUACGggGUCG- -5'
23778 3' -59.8 NC_005261.1 + 107888 0.67 0.658436
Target:  5'- gCCCGcGGCccGCUuguccgcGGCCGcgGCCUCGGCc -3'
miRNA:   3'- -GGGCaUCGu-CGA-------CCGGUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 107741 0.74 0.302141
Target:  5'- cCUCGgccGCGGggggGGCCAcGCCCCAGCg -3'
miRNA:   3'- -GGGCau-CGUCga--CCGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 107523 0.67 0.629209
Target:  5'- gCCGaagGGCAGCgcgucGGCg--GCCaCCAGCa -3'
miRNA:   3'- gGGCa--UCGUCGa----CCGguaCGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 107435 0.78 0.169974
Target:  5'- uCCgGUAGCcguccacGUUGGCCAccGCCCCGGCa -3'
miRNA:   3'- -GGgCAUCGu------CGACCGGUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 106029 0.67 0.629209
Target:  5'- aCCGgaGGCAcgccaccgcGCU-GCCcgGCCCUAGCg -3'
miRNA:   3'- gGGCa-UCGU---------CGAcCGGuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 105943 0.68 0.619125
Target:  5'- cUCCGcgAGCGcGCcgucgaUGGCCucgGCgCCCAGCg -3'
miRNA:   3'- -GGGCa-UCGU-CG------ACCGGua-CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 105271 0.68 0.598993
Target:  5'- gCUCGgcgGGCGGCaGcGCCGgcgaGCCCgGGCg -3'
miRNA:   3'- -GGGCa--UCGUCGaC-CGGUa---CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 104678 0.71 0.445273
Target:  5'- gCUGcGGCAGCgccugGGCCAccGCCCCgaagAGCg -3'
miRNA:   3'- gGGCaUCGUCGa----CCGGUa-CGGGG----UCG- -5'
23778 3' -59.8 NC_005261.1 + 104514 0.67 0.649375
Target:  5'- cUCCGUGGCGGCcgcgacggcGGCC--GCCaCCAGg -3'
miRNA:   3'- -GGGCAUCGUCGa--------CCGGuaCGG-GGUCg -5'
23778 3' -59.8 NC_005261.1 + 103692 0.67 0.659443
Target:  5'- gCCCGUuuaUAGC-GGCCAcGUcaCCCAGCa -3'
miRNA:   3'- -GGGCAuc-GUCGaCCGGUaCG--GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 103619 0.66 0.738509
Target:  5'- gCgCGggaGGCGGCggcGGCCAUcGCCUCgaAGCg -3'
miRNA:   3'- -GgGCa--UCGUCGa--CCGGUA-CGGGG--UCG- -5'
23778 3' -59.8 NC_005261.1 + 103094 0.67 0.679505
Target:  5'- gCCGggccCAGCccGGCCAgcgcCCCCGGCg -3'
miRNA:   3'- gGGCauc-GUCGa-CCGGUac--GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 103016 0.66 0.712245
Target:  5'- uCCgCGUGGCucucgaagaacgcGCgGGCCGcagggcccagcgccUGUCCCGGCa -3'
miRNA:   3'- -GG-GCAUCGu------------CGaCCGGU--------------ACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 102524 0.74 0.288616
Target:  5'- gUCCGcguGCAGCuUGGCCGccugcgGCCCCAGg -3'
miRNA:   3'- -GGGCau-CGUCG-ACCGGUa-----CGGGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.