miRNA display CGI


Results 61 - 80 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 101437 0.76 0.22266
Target:  5'- gCCGaGGCGGCgcGGuCCAgcgcugGCCCCAGCg -3'
miRNA:   3'- gGGCaUCGUCGa-CC-GGUa-----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 100487 0.68 0.609051
Target:  5'- aCCCgGUAGCAGagcGG-CGUGCCgUCGGCg -3'
miRNA:   3'- -GGG-CAUCGUCga-CCgGUACGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 100186 0.75 0.242709
Target:  5'- gCCGUGGCGGCggggcagcguggcGGCCAgcaGCCCC-GCg -3'
miRNA:   3'- gGGCAUCGUCGa------------CCGGUa--CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 99725 0.66 0.728849
Target:  5'- gCgCGUGGCcGCgucaGGCgCGUGCCgccacacggCCAGCa -3'
miRNA:   3'- -GgGCAUCGuCGa---CCG-GUACGG---------GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 99572 0.68 0.609051
Target:  5'- gUCGUAGCucugGGCCugcGCgCCCAGCg -3'
miRNA:   3'- gGGCAUCGucgaCCGGua-CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 99467 0.75 0.256894
Target:  5'- aCCCGcGGCGgcGCUGGCCGcUGCggCCAGCg -3'
miRNA:   3'- -GGGCaUCGU--CGACCGGU-ACGg-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 99022 0.66 0.719107
Target:  5'- -gCGgcGCGGC-GGCgCGcGCCCaCAGCa -3'
miRNA:   3'- ggGCauCGUCGaCCG-GUaCGGG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 97926 0.68 0.619125
Target:  5'- cCCCGcuGUA-CUGGCCGccaGCUCCGGCg -3'
miRNA:   3'- -GGGCauCGUcGACCGGUa--CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 97859 0.69 0.514138
Target:  5'- gCCGcGGCAGCgcGGCCGgcaucgauuuccgaGCCCCGGg -3'
miRNA:   3'- gGGCaUCGUCGa-CCGGUa-------------CGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 97546 0.66 0.728849
Target:  5'- cCCCGgcGguGCcGGCCcguccGCCCgGGg -3'
miRNA:   3'- -GGGCauCguCGaCCGGua---CGGGgUCg -5'
23778 3' -59.8 NC_005261.1 + 96732 0.67 0.639295
Target:  5'- aCCCGggcGCGGCgcgagucccGGCCuggGCCgCGGCc -3'
miRNA:   3'- -GGGCau-CGUCGa--------CCGGua-CGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 96563 0.67 0.629209
Target:  5'- -gCGUAGC-GCgaauauguccGCCGUGaCCCCGGCg -3'
miRNA:   3'- ggGCAUCGuCGac--------CGGUAC-GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 95164 0.74 0.275571
Target:  5'- aCCUGcaguGCGGCgagggGGaCGUGCCCCAGCc -3'
miRNA:   3'- -GGGCau--CGUCGa----CCgGUACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 94681 0.66 0.709293
Target:  5'- cCCUGaGGC-GCUGGCCAccgaggacgUGgCCgAGCu -3'
miRNA:   3'- -GGGCaUCGuCGACCGGU---------ACgGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 94530 0.67 0.629209
Target:  5'- cCUCG-AGgAGCUGGCCGUucGCCUUcaggAGCg -3'
miRNA:   3'- -GGGCaUCgUCGACCGGUA--CGGGG----UCG- -5'
23778 3' -59.8 NC_005261.1 + 93671 0.68 0.578956
Target:  5'- gUCCGcgGGCGGCgGcGCCGgcgggGCgCCGGCg -3'
miRNA:   3'- -GGGCa-UCGUCGaC-CGGUa----CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 93428 0.72 0.385147
Target:  5'- cCCCGcgauguGCuugagGGCcgUGGCCAgcaccgGCCCCAGCg -3'
miRNA:   3'- -GGGCau----CG-----UCG--ACCGGUa-----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 92932 0.67 0.639295
Target:  5'- gCCGgcggAGCAGCUGcCCGgcGUCCCGGa -3'
miRNA:   3'- gGGCa---UCGUCGACcGGUa-CGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 92890 0.68 0.598993
Target:  5'- --aGUGGCAGa-GGgUGUGCUCCAGCg -3'
miRNA:   3'- gggCAUCGUCgaCCgGUACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 90374 0.67 0.666477
Target:  5'- gCUCGUGcGCGGCgaGGCCccGCcggcggggcuggcgCCCGGCg -3'
miRNA:   3'- -GGGCAU-CGUCGa-CCGGuaCG--------------GGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.