miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 90302 0.68 0.588959
Target:  5'- cCCCGUcauGguGCUGgacuuuGCCAgccucuaCCCCAGCa -3'
miRNA:   3'- -GGGCAu--CguCGAC------CGGUac-----GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 90100 0.71 0.410257
Target:  5'- gCCCGUucGcCGGCUgGGCCGacgcgGCCCgCGGCg -3'
miRNA:   3'- -GGGCAu-C-GUCGA-CCGGUa----CGGG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 89943 0.66 0.738509
Target:  5'- gCgGUGGCgcGGCUGGCCgggaucacaGUGCCgCGcGCc -3'
miRNA:   3'- gGgCAUCG--UCGACCGG---------UACGGgGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 89824 0.69 0.559066
Target:  5'- uCCCGcGGCAcuucGCggccgGGCCGgaggGCCgCGGCg -3'
miRNA:   3'- -GGGCaUCGU----CGa----CCGGUa---CGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 88842 0.66 0.719107
Target:  5'- gCCCGgcGuCGGCUaccugGGCCGcGCCUC-GCg -3'
miRNA:   3'- -GGGCauC-GUCGA-----CCGGUaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 88757 0.67 0.65743
Target:  5'- gCCaugGUGGCGGCgcugcgcuccucGGCCcugGCCgCCGGCg -3'
miRNA:   3'- -GGg--CAUCGUCGa-----------CCGGua-CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 88158 0.69 0.553136
Target:  5'- cCCCGgccgcGCAGCcgGGCCGgggcgacgccggcgGCgCCGGCg -3'
miRNA:   3'- -GGGCau---CGUCGa-CCGGUa-------------CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 88016 0.74 0.302141
Target:  5'- gCCCGUuaaAGCGGCcGGCgGUGCCUgGGg -3'
miRNA:   3'- -GGGCA---UCGUCGaCCGgUACGGGgUCg -5'
23778 3' -59.8 NC_005261.1 + 87555 0.66 0.719107
Target:  5'- gCUgGgcGuCAGCuUGGCCGUcaGCCCCGcGCc -3'
miRNA:   3'- -GGgCauC-GUCG-ACCGGUA--CGGGGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 86871 0.71 0.410257
Target:  5'- gCCGggcgcGGCGGCcuUGGCCGcGCCCUGGUc -3'
miRNA:   3'- gGGCa----UCGUCG--ACCGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 85727 0.66 0.738509
Target:  5'- gCCGUGGCacuGGCUGagcGCCAaguccUGCaCCaCGGCc -3'
miRNA:   3'- gGGCAUCG---UCGAC---CGGU-----ACG-GG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 85090 0.66 0.709293
Target:  5'- --aGUAGCgcagcaccaGGUUGGCCAuguaaaacUGCgCCAGCu -3'
miRNA:   3'- gggCAUCG---------UCGACCGGU--------ACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 85014 0.66 0.728849
Target:  5'- gCCGcggGGUcGCgcGGCCGccgcGCCCCGGCc -3'
miRNA:   3'- gGGCa--UCGuCGa-CCGGUa---CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 84855 0.69 0.510298
Target:  5'- aCCGcgGGCcGCgUGGCCAUGaCCgAGCg -3'
miRNA:   3'- gGGCa-UCGuCG-ACCGGUACgGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 84578 0.68 0.588959
Target:  5'- cCCCGUAGac---GGCCGucUGCgCCAGCg -3'
miRNA:   3'- -GGGCAUCgucgaCCGGU--ACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 84267 0.71 0.427553
Target:  5'- cCCCGgcauggcGCAGgUGccGCCGgcgGCCCCGGCc -3'
miRNA:   3'- -GGGCau-----CGUCgAC--CGGUa--CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 84140 0.66 0.719107
Target:  5'- gUCGcUGGCGGgcCUcGGCCAcGCCCCuGCc -3'
miRNA:   3'- gGGC-AUCGUC--GA-CCGGUaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 83752 0.66 0.699416
Target:  5'- --gGUGGCGGCgcgccacGGCCggGUCgCAGCg -3'
miRNA:   3'- gggCAUCGUCGa------CCGGuaCGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 83075 0.7 0.481898
Target:  5'- cCCCGcGGCGGCcGGCgCuuccagcGCCuCCAGCg -3'
miRNA:   3'- -GGGCaUCGUCGaCCG-Gua-----CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 80799 0.66 0.699416
Target:  5'- gCCCGU-GCGGUaGaGCCccGCcgagCCCAGCg -3'
miRNA:   3'- -GGGCAuCGUCGaC-CGGuaCG----GGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.