miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 80646 0.67 0.669488
Target:  5'- cUCCGgcgAGUAGCUGG-UGUGCUCgCGGUg -3'
miRNA:   3'- -GGGCa--UCGUCGACCgGUACGGG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 79782 0.69 0.529614
Target:  5'- gCUCGUGGCAGUacgucacGGCCAUGgcgucCCCCAacauGCg -3'
miRNA:   3'- -GGGCAUCGUCGa------CCGGUAC-----GGGGU----CG- -5'
23778 3' -59.8 NC_005261.1 + 78075 0.7 0.479099
Target:  5'- gCCGgcccaGGC-GCUGGCCcccgcgccggcccagGCCCCGGCc -3'
miRNA:   3'- gGGCa----UCGuCGACCGGua-------------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 78048 0.75 0.245027
Target:  5'- gCCgGUGGUcGCgGGCCcgGCCCCcGCg -3'
miRNA:   3'- -GGgCAUCGuCGaCCGGuaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 77797 0.67 0.629209
Target:  5'- cCCCGgcgagGGCgcgcccgccgAGCU-GCC--GCCCCAGCa -3'
miRNA:   3'- -GGGCa----UCG----------UCGAcCGGuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 77561 0.66 0.738509
Target:  5'- gCCGccAGUGGCgccGCCGcGCCCUGGCa -3'
miRNA:   3'- gGGCa-UCGUCGac-CGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 77459 0.72 0.368981
Target:  5'- gCCCGgggcGCGGCUGcaGCCGcGCCCCcGCc -3'
miRNA:   3'- -GGGCau--CGUCGAC--CGGUaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 76729 0.67 0.649375
Target:  5'- gCCC---GCAGCUGGCCGacgUGCUCgCGGa -3'
miRNA:   3'- -GGGcauCGUCGACCGGU---ACGGG-GUCg -5'
23778 3' -59.8 NC_005261.1 + 76387 0.69 0.549192
Target:  5'- gCCGccGCcaacauaaaaaGGCcGGCCG-GCCCCGGCg -3'
miRNA:   3'- gGGCauCG-----------UCGaCCGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 75524 0.67 0.666477
Target:  5'- gCCGUggucgccgcgcugcAGCGGCUgcgcguccugccGGCCAU-CCCCGGg -3'
miRNA:   3'- gGGCA--------------UCGUCGA------------CCGGUAcGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 75355 0.68 0.596984
Target:  5'- cCUCGUggAGCAGCU-GCCGgcguaccuggacGCCCUGGCg -3'
miRNA:   3'- -GGGCA--UCGUCGAcCGGUa-----------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 75035 0.68 0.606031
Target:  5'- aCCC-UGGCGgccgaccuGCUGGCCAUgguguacaccgcgcGCgCCGGCg -3'
miRNA:   3'- -GGGcAUCGU--------CGACCGGUA--------------CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 74812 0.66 0.738509
Target:  5'- cCCgCGUGGCGGaggUGGCCGccgUGCUCgCGGa -3'
miRNA:   3'- -GG-GCAUCGUCg--ACCGGU---ACGGG-GUCg -5'
23778 3' -59.8 NC_005261.1 + 74061 0.66 0.738509
Target:  5'- gCUGcGGCAGCUgcgcgacgcGGCCcgGCUUguGCg -3'
miRNA:   3'- gGGCaUCGUCGA---------CCGGuaCGGGguCG- -5'
23778 3' -59.8 NC_005261.1 + 73354 0.66 0.738509
Target:  5'- gCCCGgcGcCGGCUcaGGCg--GCgCCAGCa -3'
miRNA:   3'- -GGGCauC-GUCGA--CCGguaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 72831 0.71 0.410257
Target:  5'- gCCGcaaGGCGGUcGGCCAggGCgCCAGCg -3'
miRNA:   3'- gGGCa--UCGUCGaCCGGUa-CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 72730 0.69 0.558077
Target:  5'- cCCCGUccgcgcgGGCGGCccgcauggcgGGCCGcaUGC-CCAGCa -3'
miRNA:   3'- -GGGCA-------UCGUCGa---------CCGGU--ACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 71783 0.69 0.529614
Target:  5'- gCCCGcucGCAGCUgagcgcGGCCcgGCCCguGg -3'
miRNA:   3'- -GGGCau-CGUCGA------CCGGuaCGGGguCg -5'
23778 3' -59.8 NC_005261.1 + 71610 0.67 0.629209
Target:  5'- gCCGccGCGGCccgGGCgCggGCCCgGGCg -3'
miRNA:   3'- gGGCauCGUCGa--CCG-GuaCGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 71416 0.7 0.463396
Target:  5'- gUCCGgcGCGG--GGCCcgGCCCgGGCc -3'
miRNA:   3'- -GGGCauCGUCgaCCGGuaCGGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.