miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 135067 0.66 0.738509
Target:  5'- gCCCGccgcuuuccGGCGGCgGGCuCGcGgCCCGGCg -3'
miRNA:   3'- -GGGCa--------UCGUCGaCCG-GUaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 100186 0.75 0.242709
Target:  5'- gCCGUGGCGGCggggcagcguggcGGCCAgcaGCCCC-GCg -3'
miRNA:   3'- gGGCAUCGUCGa------------CCGGUa--CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 53560 0.75 0.243287
Target:  5'- gCCGcggcccaggcgcacUAGCGGCcgcgGGCCGgcggcGCCCCAGCg -3'
miRNA:   3'- gGGC--------------AUCGUCGa---CCGGUa----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 78048 0.75 0.245027
Target:  5'- gCCgGUGGUcGCgGGCCcgGCCCCcGCg -3'
miRNA:   3'- -GGgCAUCGuCGaCCGGuaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 99467 0.75 0.256894
Target:  5'- aCCCGcGGCGgcGCUGGCCGcUGCggCCAGCg -3'
miRNA:   3'- -GGGCaUCGU--CGACCGGU-ACGg-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 63585 0.74 0.269227
Target:  5'- gCCCGaagAGCGGCgcggggcccugUGGCCGgaugcgGCuCCCAGCg -3'
miRNA:   3'- -GGGCa--UCGUCG-----------ACCGGUa-----CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 95164 0.74 0.275571
Target:  5'- aCCUGcaguGCGGCgagggGGaCGUGCCCCAGCc -3'
miRNA:   3'- -GGGCau--CGUCGa----CCgGUACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 102524 0.74 0.288616
Target:  5'- gUCCGcguGCAGCuUGGCCGccugcgGCCCCAGg -3'
miRNA:   3'- -GGGCau-CGUCG-ACCGGUa-----CGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 127781 0.74 0.295318
Target:  5'- gCCCGgcugcucgAGCGGCgGGCCGgcGCCgCGGCg -3'
miRNA:   3'- -GGGCa-------UCGUCGaCCGGUa-CGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 101437 0.76 0.22266
Target:  5'- gCCGaGGCGGCgcGGuCCAgcgcugGCCCCAGCg -3'
miRNA:   3'- gGGCaUCGUCGa-CC-GGUa-----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 127675 0.76 0.22266
Target:  5'- -gCGggacGGCGGC-GGCCGcUGCCCCGGCg -3'
miRNA:   3'- ggGCa---UCGUCGaCCGGU-ACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 15246 0.76 0.22266
Target:  5'- cCCCGcucGCAGUgGGCCGcgaucGCCCCGGCg -3'
miRNA:   3'- -GGGCau-CGUCGaCCGGUa----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 63957 0.78 0.161681
Target:  5'- cCCCGUGcGCAGCUGGUgCGUcaGCgCCAGCg -3'
miRNA:   3'- -GGGCAU-CGUCGACCG-GUA--CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 9858 0.78 0.165781
Target:  5'- gCCCGcccCAGCcGGCC-UGCCCCGGCg -3'
miRNA:   3'- -GGGCaucGUCGaCCGGuACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 9915 0.78 0.165781
Target:  5'- gCCCGcccCAGCcGGCC-UGCCCCGGCg -3'
miRNA:   3'- -GGGCaucGUCGaCCGGuACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 107435 0.78 0.169974
Target:  5'- uCCgGUAGCcguccacGUUGGCCAccGCCCCGGCa -3'
miRNA:   3'- -GGgCAUCGu------CGACCGGUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 50783 0.77 0.178644
Target:  5'- aCCGcGGCGGC-GGCC--GCCCCGGCg -3'
miRNA:   3'- gGGCaUCGUCGaCCGGuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 2796 0.76 0.202054
Target:  5'- gCCGccGGCGGCcgggaggGGCCGggcgGCCCCAGCc -3'
miRNA:   3'- gGGCa-UCGUCGa------CCGGUa---CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 29552 0.76 0.212142
Target:  5'- gCCCGgaccuGCAGCUGGCgCGccUGCUgCAGCg -3'
miRNA:   3'- -GGGCau---CGUCGACCG-GU--ACGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 130467 0.76 0.212142
Target:  5'- gCCCG-AGCGGCUcgcGG-CGUGCCUCGGCg -3'
miRNA:   3'- -GGGCaUCGUCGA---CCgGUACGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.