Results 41 - 60 of 272 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23778 | 3' | -59.8 | NC_005261.1 | + | 50783 | 0.77 | 0.178644 |
Target: 5'- aCCGcGGCGGC-GGCC--GCCCCGGCg -3' miRNA: 3'- gGGCaUCGUCGaCCGGuaCGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 107435 | 0.78 | 0.169974 |
Target: 5'- uCCgGUAGCcguccacGUUGGCCAccGCCCCGGCa -3' miRNA: 3'- -GGgCAUCGu------CGACCGGUa-CGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 9915 | 0.78 | 0.165781 |
Target: 5'- gCCCGcccCAGCcGGCC-UGCCCCGGCg -3' miRNA: 3'- -GGGCaucGUCGaCCGGuACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 9858 | 0.78 | 0.165781 |
Target: 5'- gCCCGcccCAGCcGGCC-UGCCCCGGCg -3' miRNA: 3'- -GGGCaucGUCGaCCGGuACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 63957 | 0.78 | 0.161681 |
Target: 5'- cCCCGUGcGCAGCUGGUgCGUcaGCgCCAGCg -3' miRNA: 3'- -GGGCAU-CGUCGACCG-GUA--CGgGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 78048 | 0.75 | 0.245027 |
Target: 5'- gCCgGUGGUcGCgGGCCcgGCCCCcGCg -3' miRNA: 3'- -GGgCAUCGuCGaCCGGuaCGGGGuCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 99467 | 0.75 | 0.256894 |
Target: 5'- aCCCGcGGCGgcGCUGGCCGcUGCggCCAGCg -3' miRNA: 3'- -GGGCaUCGU--CGACCGGU-ACGg-GGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 128836 | 0.73 | 0.345618 |
Target: 5'- gCUCGc-GCGGCUGGCCGccacggUGCCCC-GCc -3' miRNA: 3'- -GGGCauCGUCGACCGGU------ACGGGGuCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 66542 | 0.73 | 0.343341 |
Target: 5'- aCgCGcAGCAGCUggucGGCCGUGCCgcgcucgaacgaguCCAGCa -3' miRNA: 3'- -GgGCaUCGUCGA----CCGGUACGG--------------GGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 58230 | 0.73 | 0.338069 |
Target: 5'- gCCCGcGGCGGCgggguccucGGCCAUGCCgCGccGCg -3' miRNA: 3'- -GGGCaUCGUCGa--------CCGGUACGGgGU--CG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 39394 | 0.73 | 0.338069 |
Target: 5'- gCCC-UGGCGGCgacCCGaGCCCCAGCg -3' miRNA: 3'- -GGGcAUCGUCGaccGGUaCGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 65861 | 0.73 | 0.323335 |
Target: 5'- gUCCGcGGCGGCuUGuaCA-GCCCCAGCg -3' miRNA: 3'- -GGGCaUCGUCG-ACcgGUaCGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 115561 | 0.73 | 0.318292 |
Target: 5'- gUCCGUGuggcagcacacgaacGCGGCgaggaacUGGCCGUacgugaGCCCCAGCg -3' miRNA: 3'- -GGGCAU---------------CGUCG-------ACCGGUA------CGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 88016 | 0.74 | 0.302141 |
Target: 5'- gCCCGUuaaAGCGGCcGGCgGUGCCUgGGg -3' miRNA: 3'- -GGGCA---UCGUCGaCCGgUACGGGgUCg -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 107741 | 0.74 | 0.302141 |
Target: 5'- cCUCGgccGCGGggggGGCCAcGCCCCAGCg -3' miRNA: 3'- -GGGCau-CGUCga--CCGGUaCGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 20923 | 0.74 | 0.301453 |
Target: 5'- cCCCG-AGCuGCUGGCCAgcgGCauccuccUCCGGCu -3' miRNA: 3'- -GGGCaUCGuCGACCGGUa--CG-------GGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 127781 | 0.74 | 0.295318 |
Target: 5'- gCCCGgcugcucgAGCGGCgGGCCGgcGCCgCGGCg -3' miRNA: 3'- -GGGCa-------UCGUCGaCCGGUa-CGGgGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 102524 | 0.74 | 0.288616 |
Target: 5'- gUCCGcguGCAGCuUGGCCGccugcgGCCCCAGg -3' miRNA: 3'- -GGGCau-CGUCG-ACCGGUa-----CGGGGUCg -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 95164 | 0.74 | 0.275571 |
Target: 5'- aCCUGcaguGCGGCgagggGGaCGUGCCCCAGCc -3' miRNA: 3'- -GGGCau--CGUCGa----CCgGUACGGGGUCG- -5' |
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23778 | 3' | -59.8 | NC_005261.1 | + | 63585 | 0.74 | 0.269227 |
Target: 5'- gCCCGaagAGCGGCgcggggcccugUGGCCGgaugcgGCuCCCAGCg -3' miRNA: 3'- -GGGCa--UCGUCG-----------ACCGGUa-----CG-GGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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