miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 30332 0.71 0.445273
Target:  5'- gCCGgcGCGGCUggcGGCCGcGCUCgCGGCc -3'
miRNA:   3'- gGGCauCGUCGA---CCGGUaCGGG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 104678 0.71 0.445273
Target:  5'- gCUGcGGCAGCgccugGGCCAccGCCCCgaagAGCg -3'
miRNA:   3'- gGGCaUCGUCGa----CCGGUa-CGGGG----UCG- -5'
23778 3' -59.8 NC_005261.1 + 126882 0.71 0.445273
Target:  5'- gCCCGcAGCAGCgcagGGCCcucgggGaagCCCAGCu -3'
miRNA:   3'- -GGGCaUCGUCGa---CCGGua----Cg--GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 53353 0.71 0.445273
Target:  5'- cCCCGccGC-GCUuucGGCCGccGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGuCGA---CCGGUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 60707 0.7 0.454285
Target:  5'- gCgCGUGGCGGCgcacGGCgGUGCCaCC-GCg -3'
miRNA:   3'- -GgGCAUCGUCGa---CCGgUACGG-GGuCG- -5'
23778 3' -59.8 NC_005261.1 + 86871 0.71 0.410257
Target:  5'- gCCGggcgcGGCGGCcuUGGCCGcGCCCUGGUc -3'
miRNA:   3'- gGGCa----UCGUCG--ACCGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 72831 0.71 0.410257
Target:  5'- gCCGcaaGGCGGUcGGCCAggGCgCCAGCg -3'
miRNA:   3'- gGGCa--UCGUCGaCCGGUa-CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 121386 0.72 0.353286
Target:  5'- cCCCGcGGCGGCgGcGCC-UGCCCgAGUg -3'
miRNA:   3'- -GGGCaUCGUCGaC-CGGuACGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 15915 0.72 0.361074
Target:  5'- cCCCGc-GCAGCcggGGCCGgggccgggGCCCgGGCa -3'
miRNA:   3'- -GGGCauCGUCGa--CCGGUa-------CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 77459 0.72 0.368981
Target:  5'- gCCCGgggcGCGGCUGcaGCCGcGCCCCcGCc -3'
miRNA:   3'- -GGGCau--CGUCGAC--CGGUaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 30719 0.72 0.368981
Target:  5'- cCCCGgcGCcgGGCcgccaGGCCcgaGCCCCAGCc -3'
miRNA:   3'- -GGGCauCG--UCGa----CCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 65381 0.72 0.368981
Target:  5'- gCCCGgcauuaccuGCGGCgGGUUGggcgGCCCCGGCa -3'
miRNA:   3'- -GGGCau-------CGUCGaCCGGUa---CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 93428 0.72 0.385147
Target:  5'- cCCCGcgauguGCuugagGGCcgUGGCCAgcaccgGCCCCAGCg -3'
miRNA:   3'- -GGGCau----CG-----UCG--ACCGGUa-----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 28431 0.72 0.385147
Target:  5'- aCCCGcgcgcaccGCGGCcGGCCAUGgcgucUCCCGGCg -3'
miRNA:   3'- -GGGCau------CGUCGaCCGGUAC-----GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 49203 0.72 0.385147
Target:  5'- gCCGacagcgagGGCGGgaGGCCG-GCgCCCAGCg -3'
miRNA:   3'- gGGCa-------UCGUCgaCCGGUaCG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 66034 0.72 0.393404
Target:  5'- gUCGUAGuCGGCggccacGGCCA-GCCCCGGg -3'
miRNA:   3'- gGGCAUC-GUCGa-----CCGGUaCGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 45287 0.72 0.393404
Target:  5'- gCCGUAcCGGCUGGCCuuguaccGCCCCGa- -3'
miRNA:   3'- gGGCAUcGUCGACCGGua-----CGGGGUcg -5'
23778 3' -59.8 NC_005261.1 + 130767 0.71 0.401774
Target:  5'- aCCaCGgAGCAGCUGGC---GCCCCGcGCu -3'
miRNA:   3'- -GG-GCaUCGUCGACCGguaCGGGGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 58943 0.71 0.410257
Target:  5'- gCCCGgaAGC-GCUcGGCCAgcagcGCCUCGGCg -3'
miRNA:   3'- -GGGCa-UCGuCGA-CCGGUa----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 90100 0.71 0.410257
Target:  5'- gCCCGUucGcCGGCUgGGCCGacgcgGCCCgCGGCg -3'
miRNA:   3'- -GGGCAu-C-GUCGA-CCGGUa----CGGG-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.