miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 47890 0.66 0.917748
Target:  5'- gGAGCggcGGCGgcGGCGCGAGguccuccaaccGCGC-GGCc -3'
miRNA:   3'- -CUUGa--CCGUa-UCGCGCUU-----------CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 27355 0.66 0.917748
Target:  5'- gGAGC-GGCGccggaccGGCGCGAGGC-CggugGGCa -3'
miRNA:   3'- -CUUGaCCGUa------UCGCGCUUCGcGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 69277 0.66 0.917748
Target:  5'- cGAGCcgcccGCGccgaccccGGCGCGggGCGCcggUGGCg -3'
miRNA:   3'- -CUUGac---CGUa-------UCGCGCuuCGCG---ACCG- -5'
23778 5' -54.9 NC_005261.1 + 115152 0.66 0.917748
Target:  5'- cGAGCcgggGGUcgGGCGCcuccuGCGCgaugGGCa -3'
miRNA:   3'- -CUUGa---CCGuaUCGCGcuu--CGCGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 88195 0.66 0.917748
Target:  5'- -cGCcGGCGaGGCGgGccGCGCcGGCa -3'
miRNA:   3'- cuUGaCCGUaUCGCgCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 61045 0.66 0.917748
Target:  5'- cAGCUGGC-UGGUGCuGGGC-CUGGa -3'
miRNA:   3'- cUUGACCGuAUCGCGcUUCGcGACCg -5'
23778 5' -54.9 NC_005261.1 + 89933 0.66 0.917748
Target:  5'- gGAGCUgucGGCgGUGGCGCG----GCUGGCc -3'
miRNA:   3'- -CUUGA---CCG-UAUCGCGCuucgCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 41748 0.66 0.917748
Target:  5'- --uCUGGCAcgacaaacuugUccacgAGCGCGAGGUGCUcuuccgucacgGGCa -3'
miRNA:   3'- cuuGACCGU-----------A-----UCGCGCUUCGCGA-----------CCG- -5'
23778 5' -54.9 NC_005261.1 + 82864 0.66 0.917748
Target:  5'- cAGCgaaGGC--GGCGac-GGCGCUGGCg -3'
miRNA:   3'- cUUGa--CCGuaUCGCgcuUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 120631 0.66 0.914183
Target:  5'- -uGCUGGUggcggcccugugccuGcGGCGCaAGGCGCgGGCg -3'
miRNA:   3'- cuUGACCG---------------UaUCGCGcUUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 43780 0.66 0.911757
Target:  5'- ----gGGCGgcGCGCGGAGgGCgccgcgGGUg -3'
miRNA:   3'- cuugaCCGUauCGCGCUUCgCGa-----CCG- -5'
23778 5' -54.9 NC_005261.1 + 55426 0.66 0.911757
Target:  5'- cGGCUGGCGccacCGCGAgcccuccgagcGGCGCggugGGCc -3'
miRNA:   3'- cUUGACCGUauc-GCGCU-----------UCGCGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 129307 0.66 0.911757
Target:  5'- ----cGGCGccccGCGCcu-GCGCUGGCg -3'
miRNA:   3'- cuugaCCGUau--CGCGcuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 98733 0.66 0.911757
Target:  5'- gGGGCacGCGgccGCGCG-GGCGUUGGCc -3'
miRNA:   3'- -CUUGacCGUau-CGCGCuUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 60104 0.66 0.911757
Target:  5'- -cGCUGGCc-AGCGCGcc-CGCgGGCa -3'
miRNA:   3'- cuUGACCGuaUCGCGCuucGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 13102 0.66 0.911757
Target:  5'- cGGGCUcggcucgggGGCGUcggcGGcCGCGggGCGCgugUGGUc -3'
miRNA:   3'- -CUUGA---------CCGUA----UC-GCGCuuCGCG---ACCG- -5'
23778 5' -54.9 NC_005261.1 + 1821 0.66 0.909911
Target:  5'- aGAGCcGcGCGUAagcggccucggcgcGCGCGAAgGCGCcgGGCc -3'
miRNA:   3'- -CUUGaC-CGUAU--------------CGCGCUU-CGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 37145 0.66 0.909911
Target:  5'- cGAgUGGCAUGgcaccagcgcucgcGCGCGcuuGCGCcugGGCg -3'
miRNA:   3'- cUUgACCGUAU--------------CGCGCuu-CGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 105277 0.66 0.906152
Target:  5'- cGGGC-GGCAgcgccggcgagcccgGGCGCGcGAGCGCggGGUc -3'
miRNA:   3'- -CUUGaCCGUa--------------UCGCGC-UUCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 109195 0.66 0.905517
Target:  5'- -cGCgucgGGCGU-GCGC-AGGCGCUcguaGGCg -3'
miRNA:   3'- cuUGa---CCGUAuCGCGcUUCGCGA----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.