miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 62298 0.66 0.8923
Target:  5'- ----cGGCGccGCGCGGGcGCGC-GGCg -3'
miRNA:   3'- cuugaCCGUauCGCGCUU-CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 82166 0.66 0.8923
Target:  5'- cAGCaaGCGcGGCGCGGaaGGCGC-GGCg -3'
miRNA:   3'- cUUGacCGUaUCGCGCU--UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 127712 0.66 0.8923
Target:  5'- gGAGCUGcGCGUGGCcugccugguaGCgGGAGC-UUGGCg -3'
miRNA:   3'- -CUUGAC-CGUAUCG----------CG-CUUCGcGACCG- -5'
23778 5' -54.9 NC_005261.1 + 90202 0.66 0.89903
Target:  5'- gGAGCgcgggGGCGgcggAGCGCccucGCGCggcgGGCg -3'
miRNA:   3'- -CUUGa----CCGUa---UCGCGcuu-CGCGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 50993 0.66 0.89903
Target:  5'- cGAC-GGC--GGCGCGuGGGCGC-GGCg -3'
miRNA:   3'- cUUGaCCGuaUCGCGC-UUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 84967 0.66 0.8923
Target:  5'- ----aGGCGUcgGGCGCGuccgcgauGCGCcGGCg -3'
miRNA:   3'- cuugaCCGUA--UCGCGCuu------CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 88448 0.66 0.8923
Target:  5'- -uGCUGGCcgcgccGCGUG-AGCGUgugGGCg -3'
miRNA:   3'- cuUGACCGuau---CGCGCuUCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 96616 0.66 0.89903
Target:  5'- ----cGcGCGUGGCGCGcAGCcGCcgGGCg -3'
miRNA:   3'- cuugaC-CGUAUCGCGCuUCG-CGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 49390 0.66 0.8923
Target:  5'- -cGCUGGCc-AGCGUGcAGCGCUcgaagaGGUg -3'
miRNA:   3'- cuUGACCGuaUCGCGCuUCGCGA------CCG- -5'
23778 5' -54.9 NC_005261.1 + 62068 0.66 0.89903
Target:  5'- cAGCUGccccGCcucGCGCGAGGCGCUGcccaGCu -3'
miRNA:   3'- cUUGAC----CGuauCGCGCUUCGCGAC----CG- -5'
23778 5' -54.9 NC_005261.1 + 57530 0.66 0.89903
Target:  5'- -cACaGGCAcGGCGCG--GCGCacgGGCa -3'
miRNA:   3'- cuUGaCCGUaUCGCGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 45617 0.66 0.89903
Target:  5'- cGGC-GGCGcGGCGCGgcGCgGCgGGCc -3'
miRNA:   3'- cUUGaCCGUaUCGCGCuuCG-CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 94653 0.66 0.90488
Target:  5'- cGAACaugcGGCuccGCGagcucauucccccUGAGGCGCUGGCc -3'
miRNA:   3'- -CUUGa---CCGuauCGC-------------GCUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 77441 0.66 0.8923
Target:  5'- cAGCUGGuCGUcagccaGGCcCGggGCGC-GGCu -3'
miRNA:   3'- cUUGACC-GUA------UCGcGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 73948 0.66 0.89903
Target:  5'- cGGCUuGCAga-CGCGggGCGCgcccgGGCc -3'
miRNA:   3'- cUUGAcCGUaucGCGCuuCGCGa----CCG- -5'
23778 5' -54.9 NC_005261.1 + 73744 0.66 0.895021
Target:  5'- -cGCgggGGUccGGUGCcacggccgcuucuacGAGGCGCUGGCc -3'
miRNA:   3'- cuUGa--CCGuaUCGCG---------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 76076 0.66 0.89903
Target:  5'- aGGGCgGGCugcuGCGCcucguGGCGCUGGa -3'
miRNA:   3'- -CUUGaCCGuau-CGCGcu---UCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 27355 0.66 0.917748
Target:  5'- gGAGC-GGCGccggaccGGCGCGAGGC-CggugGGCa -3'
miRNA:   3'- -CUUGaCCGUa------UCGCGCUUCGcGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 88093 0.66 0.89903
Target:  5'- cGAACggGGCGaGGCGCccccgcGCGCcGGCu -3'
miRNA:   3'- -CUUGa-CCGUaUCGCGcuu---CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 80297 0.66 0.8923
Target:  5'- ----cGuGCGUGGCGuUGAAGCGCUcacGGUa -3'
miRNA:   3'- cuugaC-CGUAUCGC-GCUUCGCGA---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.