miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 1821 0.66 0.909911
Target:  5'- aGAGCcGcGCGUAagcggccucggcgcGCGCGAAgGCGCcgGGCc -3'
miRNA:   3'- -CUUGaC-CGUAU--------------CGCGCUU-CGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 88093 0.66 0.89903
Target:  5'- cGAACggGGCGaGGCGCccccgcGCGCcGGCu -3'
miRNA:   3'- -CUUGa-CCGUaUCGCGcuu---CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 49390 0.66 0.8923
Target:  5'- -cGCUGGCc-AGCGUGcAGCGCUcgaagaGGUg -3'
miRNA:   3'- cuUGACCGuaUCGCGCuUCGCGA------CCG- -5'
23778 5' -54.9 NC_005261.1 + 55426 0.66 0.911757
Target:  5'- cGGCUGGCGccacCGCGAgcccuccgagcGGCGCggugGGCc -3'
miRNA:   3'- cUUGACCGUauc-GCGCU-----------UCGCGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 109195 0.66 0.905517
Target:  5'- -cGCgucgGGCGU-GCGC-AGGCGCUcguaGGCg -3'
miRNA:   3'- cuUGa---CCGUAuCGCGcUUCGCGA----CCG- -5'
23778 5' -54.9 NC_005261.1 + 28770 0.66 0.905517
Target:  5'- gGGGCgccugGGCcgcGGCGCG-GGCGCUcgcGGCc -3'
miRNA:   3'- -CUUGa----CCGua-UCGCGCuUCGCGA---CCG- -5'
23778 5' -54.9 NC_005261.1 + 54470 0.66 0.905517
Target:  5'- aGGGuCUGGCAUccgGGCGUcGGGCgGCaGGCg -3'
miRNA:   3'- -CUU-GACCGUA---UCGCGcUUCG-CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 31676 0.66 0.905517
Target:  5'- cGGCUGGCcgcGGCGCGGcGGCgGCUGa- -3'
miRNA:   3'- cUUGACCGua-UCGCGCU-UCG-CGACcg -5'
23778 5' -54.9 NC_005261.1 + 73744 0.66 0.895021
Target:  5'- -cGCgggGGUccGGUGCcacggccgcuucuacGAGGCGCUGGCc -3'
miRNA:   3'- cuUGa--CCGuaUCGCG---------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 60104 0.66 0.911757
Target:  5'- -cGCUGGCc-AGCGCGcc-CGCgGGCa -3'
miRNA:   3'- cuUGACCGuaUCGCGCuucGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 96616 0.66 0.89903
Target:  5'- ----cGcGCGUGGCGCGcAGCcGCcgGGCg -3'
miRNA:   3'- cuugaC-CGUAUCGCGCuUCG-CGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 37145 0.66 0.909911
Target:  5'- cGAgUGGCAUGgcaccagcgcucgcGCGCGcuuGCGCcugGGCg -3'
miRNA:   3'- cUUgACCGUAU--------------CGCGCuu-CGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 69277 0.66 0.917748
Target:  5'- cGAGCcgcccGCGccgaccccGGCGCGggGCGCcggUGGCg -3'
miRNA:   3'- -CUUGac---CGUa-------UCGCGCuuCGCG---ACCG- -5'
23778 5' -54.9 NC_005261.1 + 94653 0.66 0.90488
Target:  5'- cGAACaugcGGCuccGCGagcucauucccccUGAGGCGCUGGCc -3'
miRNA:   3'- -CUUGa---CCGuauCGC-------------GCUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 57530 0.66 0.89903
Target:  5'- -cACaGGCAcGGCGCG--GCGCacgGGCa -3'
miRNA:   3'- cuUGaCCGUaUCGCGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 19066 0.66 0.905517
Target:  5'- cGGGCUGcGCGgcucucGGCGCGugcuugcguGGCGUUGGa -3'
miRNA:   3'- -CUUGAC-CGUa-----UCGCGCu--------UCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 62068 0.66 0.89903
Target:  5'- cAGCUGccccGCcucGCGCGAGGCGCUGcccaGCu -3'
miRNA:   3'- cUUGAC----CGuauCGCGCUUCGCGAC----CG- -5'
23778 5' -54.9 NC_005261.1 + 13102 0.66 0.911757
Target:  5'- cGGGCUcggcucgggGGCGUcggcGGcCGCGggGCGCgugUGGUc -3'
miRNA:   3'- -CUUGA---------CCGUA----UC-GCGCuuCGCG---ACCG- -5'
23778 5' -54.9 NC_005261.1 + 127863 0.66 0.89903
Target:  5'- cGGCgccagGGCAcgAGCGgGAGucGCGCcGGCg -3'
miRNA:   3'- cUUGa----CCGUa-UCGCgCUU--CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 77441 0.66 0.8923
Target:  5'- cAGCUGGuCGUcagccaGGCcCGggGCGC-GGCu -3'
miRNA:   3'- cUUGACC-GUA------UCGcGCuuCGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.