Results 41 - 60 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 28770 | 0.66 | 0.905517 |
Target: 5'- gGGGCgccugGGCcgcGGCGCG-GGCGCUcgcGGCc -3' miRNA: 3'- -CUUGa----CCGua-UCGCGCuUCGCGA---CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 41748 | 0.66 | 0.917748 |
Target: 5'- --uCUGGCAcgacaaacuugUccacgAGCGCGAGGUGCUcuuccgucacgGGCa -3' miRNA: 3'- cuuGACCGU-----------A-----UCGCGCUUCGCGA-----------CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 88195 | 0.66 | 0.917748 |
Target: 5'- -cGCcGGCGaGGCGgGccGCGCcGGCa -3' miRNA: 3'- cuUGaCCGUaUCGCgCuuCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 19066 | 0.66 | 0.905517 |
Target: 5'- cGGGCUGcGCGgcucucGGCGCGugcuugcguGGCGUUGGa -3' miRNA: 3'- -CUUGAC-CGUa-----UCGCGCu--------UCGCGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 38270 | 0.67 | 0.855139 |
Target: 5'- uGGGCUGGgGgcggcUGGUGCacgcGGUGCUGGCc -3' miRNA: 3'- -CUUGACCgU-----AUCGCGcu--UCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 41459 | 0.67 | 0.855139 |
Target: 5'- uGGACUGGCGUccuggucgcGGCucuGCGAGuaGUUGGUa -3' miRNA: 3'- -CUUGACCGUA---------UCG---CGCUUcgCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 96958 | 0.67 | 0.854339 |
Target: 5'- cGGCggGGCAgccgccgGGCGCGAuucacgcggccucGGCGC-GGCu -3' miRNA: 3'- cUUGa-CCGUa------UCGCGCU-------------UCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 17542 | 0.67 | 0.878122 |
Target: 5'- aAACUGGgc-GGCGCGGgcccgccguucGGCGgUGGCc -3' miRNA: 3'- cUUGACCguaUCGCGCU-----------UCGCgACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 121111 | 0.67 | 0.855139 |
Target: 5'- -uGCgGGUccucuagGGCGCgGAGGCGCgGGCg -3' miRNA: 3'- cuUGaCCGua-----UCGCG-CUUCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 118876 | 0.67 | 0.878122 |
Target: 5'- --cCUGGCcucGGCcaccGCGGGcGCGCUGGUg -3' miRNA: 3'- cuuGACCGua-UCG----CGCUU-CGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 48118 | 0.67 | 0.878122 |
Target: 5'- aGACgGGCAUGGCGC---GCGCgGGa -3' miRNA: 3'- cUUGaCCGUAUCGCGcuuCGCGaCCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 47531 | 0.67 | 0.878122 |
Target: 5'- cGAACUcgacGGCGUucccgGGCGCGgcGaaGUUGGCg -3' miRNA: 3'- -CUUGA----CCGUA-----UCGCGCuuCg-CGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 108754 | 0.67 | 0.878122 |
Target: 5'- ----cGGCGUccgcGGCGCGccGCGCcacGGCa -3' miRNA: 3'- cuugaCCGUA----UCGCGCuuCGCGa--CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 94773 | 0.67 | 0.885329 |
Target: 5'- aGGACgUGGCGccGCGCGAgcucgaGGUGCUGcuGCc -3' miRNA: 3'- -CUUG-ACCGUauCGCGCU------UCGCGAC--CG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 81492 | 0.67 | 0.878122 |
Target: 5'- aGGGCcgcGGC-UAGCGCGgcGCGCgcgccgccgccGGCg -3' miRNA: 3'- -CUUGa--CCGuAUCGCGCuuCGCGa----------CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 32375 | 0.67 | 0.870684 |
Target: 5'- -cGCUGGUgcaGGCGCGgcGCgGC-GGCg -3' miRNA: 3'- cuUGACCGua-UCGCGCuuCG-CGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 75816 | 0.67 | 0.881033 |
Target: 5'- -cGCUGGUgcccGGCGCGGccgcgcccggggaggGGCGCgcGGCg -3' miRNA: 3'- cuUGACCGua--UCGCGCU---------------UCGCGa-CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 95672 | 0.67 | 0.877388 |
Target: 5'- cGGGCgcgGGUGUgagcacgugcacgAGCGCGAGuauGCGCgcgGGCu -3' miRNA: 3'- -CUUGa--CCGUA-------------UCGCGCUU---CGCGa--CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 97631 | 0.67 | 0.869928 |
Target: 5'- gGAGCgGGCGgagcgGGCGCGGgugccgcaccuggGGgGCcGGCg -3' miRNA: 3'- -CUUGaCCGUa----UCGCGCU-------------UCgCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 118206 | 0.67 | 0.885329 |
Target: 5'- --cCUGccGCGcuGCGCGggGCGCUgacGGCc -3' miRNA: 3'- cuuGAC--CGUauCGCGCuuCGCGA---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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