miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 1001 0.67 0.863021
Target:  5'- aGACgggGGCGgggGGCGgGggGCGggugGGCu -3'
miRNA:   3'- cUUGa--CCGUa--UCGCgCuuCGCga--CCG- -5'
23778 5' -54.9 NC_005261.1 + 20832 0.67 0.847044
Target:  5'- uGAACUGcGCGUucGCG-GggGCaGCgUGGCg -3'
miRNA:   3'- -CUUGAC-CGUAu-CGCgCuuCG-CG-ACCG- -5'
23778 5' -54.9 NC_005261.1 + 116776 0.67 0.847044
Target:  5'- --uCUGGUAUucAGcCGCGAGGgcaUGCUGGUg -3'
miRNA:   3'- cuuGACCGUA--UC-GCGCUUC---GCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 85961 0.67 0.847044
Target:  5'- aAGCUGGCGUGGUccGUGAuugcGCGCUcGaGCu -3'
miRNA:   3'- cUUGACCGUAUCG--CGCUu---CGCGA-C-CG- -5'
23778 5' -54.9 NC_005261.1 + 24136 0.67 0.847044
Target:  5'- gGGGCUGG-GUGG-GCGggGCucacCUGGCg -3'
miRNA:   3'- -CUUGACCgUAUCgCGCuuCGc---GACCG- -5'
23778 5' -54.9 NC_005261.1 + 11468 0.67 0.847044
Target:  5'- gGAGCgGGCGcggaGGgGCGggGCGggGGUg -3'
miRNA:   3'- -CUUGaCCGUa---UCgCGCuuCGCgaCCG- -5'
23778 5' -54.9 NC_005261.1 + 94773 0.67 0.885329
Target:  5'- aGGACgUGGCGccGCGCGAgcucgaGGUGCUGcuGCc -3'
miRNA:   3'- -CUUG-ACCGUauCGCGCU------UCGCGAC--CG- -5'
23778 5' -54.9 NC_005261.1 + 118206 0.67 0.885329
Target:  5'- --cCUGccGCGcuGCGCGggGCGCUgacGGCc -3'
miRNA:   3'- cuuGAC--CGUauCGCGCuuCGCGA---CCG- -5'
23778 5' -54.9 NC_005261.1 + 75816 0.67 0.881033
Target:  5'- -cGCUGGUgcccGGCGCGGccgcgcccggggaggGGCGCgcGGCg -3'
miRNA:   3'- cuUGACCGua--UCGCGCU---------------UCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 78509 0.67 0.847044
Target:  5'- cGAGaagaUGGgGaGGCGCG-AGCGgaGGCg -3'
miRNA:   3'- -CUUg---ACCgUaUCGCGCuUCGCgaCCG- -5'
23778 5' -54.9 NC_005261.1 + 15533 0.67 0.847044
Target:  5'- gGAGCggaaGGCGUcguuCGCGAcGCGCgGGCa -3'
miRNA:   3'- -CUUGa---CCGUAuc--GCGCUuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 74877 0.67 0.847044
Target:  5'- cGGACgcGGCGgcGGCgGCGGAgucggcggcccGCGCUGGCc -3'
miRNA:   3'- -CUUGa-CCGUa-UCG-CGCUU-----------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 90401 0.67 0.859894
Target:  5'- gGGGCUGGCGcccGGCGCGGAcuaCGCgacguucgacgugGGCg -3'
miRNA:   3'- -CUUGACCGUa--UCGCGCUUc--GCGa------------CCG- -5'
23778 5' -54.9 NC_005261.1 + 98349 0.67 0.855139
Target:  5'- cGACgcgggGGCGggggugGGCGCG-GGCuCUGGCg -3'
miRNA:   3'- cUUGa----CCGUa-----UCGCGCuUCGcGACCG- -5'
23778 5' -54.9 NC_005261.1 + 77199 0.67 0.855139
Target:  5'- -uGCaGGCG-AGCGCGGuguuccCGCUGGCc -3'
miRNA:   3'- cuUGaCCGUaUCGCGCUuc----GCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 62808 0.67 0.855139
Target:  5'- cGGGCUGGgcCAUAucgccGCGCGggGCaCcGGCg -3'
miRNA:   3'- -CUUGACC--GUAU-----CGCGCuuCGcGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 41459 0.67 0.855139
Target:  5'- uGGACUGGCGUccuggucgcGGCucuGCGAGuaGUUGGUa -3'
miRNA:   3'- -CUUGACCGUA---------UCG---CGCUUcgCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 121111 0.67 0.855139
Target:  5'- -uGCgGGUccucuagGGCGCgGAGGCGCgGGCg -3'
miRNA:   3'- cuUGaCCGua-----UCGCG-CUUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 38270 0.67 0.855139
Target:  5'- uGGGCUGGgGgcggcUGGUGCacgcGGUGCUGGCc -3'
miRNA:   3'- -CUUGACCgU-----AUCGCGcu--UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 96958 0.67 0.854339
Target:  5'- cGGCggGGCAgccgccgGGCGCGAuucacgcggccucGGCGC-GGCu -3'
miRNA:   3'- cUUGa-CCGUa------UCGCGCU-------------UCGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.