miRNA display CGI


Results 81 - 100 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 101695 0.67 0.863021
Target:  5'- aAGCgGGCGUGGU-CGAAGCGCUccaGCu -3'
miRNA:   3'- cUUGaCCGUAUCGcGCUUCGCGAc--CG- -5'
23778 5' -54.9 NC_005261.1 + 112346 0.67 0.863021
Target:  5'- aAGCggGGCAUcaugGGCGCgcuGAAGCuGCUGGa -3'
miRNA:   3'- cUUGa-CCGUA----UCGCG---CUUCG-CGACCg -5'
23778 5' -54.9 NC_005261.1 + 88809 0.67 0.863021
Target:  5'- aGGACgccGGCGgcggGGCgGCGgcGCGCgccGGCc -3'
miRNA:   3'- -CUUGa--CCGUa---UCG-CGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 126956 0.67 0.863021
Target:  5'- cGGGCgcgggGGCGgcAGCGCGAAccGCGCgGGg -3'
miRNA:   3'- -CUUGa----CCGUa-UCGCGCUU--CGCGaCCg -5'
23778 5' -54.9 NC_005261.1 + 135626 0.68 0.816258
Target:  5'- aAGCUGGCGcccuucaugcgcugcUAccuGCGCG-GGCGCgGGCg -3'
miRNA:   3'- cUUGACCGU---------------AU---CGCGCuUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 82578 0.68 0.812689
Target:  5'- cAGCUcGCGcAGCGCGuccucguuGCGCUGGUc -3'
miRNA:   3'- cUUGAcCGUaUCGCGCuu------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 99084 0.68 0.812689
Target:  5'- ----aGGCAgggcGGCGCGgcGCGCagcGGCu -3'
miRNA:   3'- cuugaCCGUa---UCGCGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 37875 0.68 0.812689
Target:  5'- --cCUGGCGgcGCGUgcuGGAGCccgaGCUGGCc -3'
miRNA:   3'- cuuGACCGUauCGCG---CUUCG----CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 14959 0.68 0.803648
Target:  5'- cGAGCgGGCGUGccuggggcgacuGCGCGGccGCGCcGGCc -3'
miRNA:   3'- -CUUGaCCGUAU------------CGCGCUu-CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 76409 0.68 0.803648
Target:  5'- cGGCcGGCcccGGCGCGugcaGAGCGCcGGCg -3'
miRNA:   3'- cUUGaCCGua-UCGCGC----UUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 87484 0.68 0.803648
Target:  5'- ----aGGUucGGCGCGGccGUGCUGGCg -3'
miRNA:   3'- cuugaCCGuaUCGCGCUu-CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 31728 0.68 0.821558
Target:  5'- cGAACUGGCc--GCGCGAuggcccGGcCGUcgGGCa -3'
miRNA:   3'- -CUUGACCGuauCGCGCU------UC-GCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 57789 0.68 0.838744
Target:  5'- ----cGGCGUcGCGCGGcgGGCGCgcgaaGGCc -3'
miRNA:   3'- cuugaCCGUAuCGCGCU--UCGCGa----CCG- -5'
23778 5' -54.9 NC_005261.1 + 113034 0.68 0.830246
Target:  5'- aGAGCgGGCc--GCGCGcGGCG-UGGCg -3'
miRNA:   3'- -CUUGaCCGuauCGCGCuUCGCgACCG- -5'
23778 5' -54.9 NC_005261.1 + 121796 0.68 0.830246
Target:  5'- cGGGCUgGGCAgggGGCGCGuGGCug-GGCu -3'
miRNA:   3'- -CUUGA-CCGUa--UCGCGCuUCGcgaCCG- -5'
23778 5' -54.9 NC_005261.1 + 117711 0.68 0.833668
Target:  5'- ----aGGCcgGcGCGCGGGcccgcaagcggccgcGCGCUGGCg -3'
miRNA:   3'- cuugaCCGuaU-CGCGCUU---------------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 32185 0.68 0.838744
Target:  5'- -uGCgGGCGgcGCGCGcuGGaGCUGGCg -3'
miRNA:   3'- cuUGaCCGUauCGCGCu-UCgCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 31437 0.68 0.838744
Target:  5'- -cGCUGGCGgcGCcgcccgGCGAggacgAGCGCcGGCg -3'
miRNA:   3'- cuUGACCGUauCG------CGCU-----UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 56848 0.68 0.838744
Target:  5'- aGAcCUGGUuccUGGUGCcgcuGAucGCGCUGGCg -3'
miRNA:   3'- -CUuGACCGu--AUCGCG----CUu-CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 38595 0.68 0.830246
Target:  5'- -uGCUGGCGgccCGCGGcuggcgGGUGUUGGCc -3'
miRNA:   3'- cuUGACCGUaucGCGCU------UCGCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.