miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 31814 0.75 0.423136
Target:  5'- -cGCUGGCcugAGCgGCGc-GCGCUGGCg -3'
miRNA:   3'- cuUGACCGua-UCG-CGCuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 136902 0.75 0.423136
Target:  5'- -uACUGGCGUGGUGUGGGccGCGC-GGCc -3'
miRNA:   3'- cuUGACCGUAUCGCGCUU--CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 130494 0.74 0.499075
Target:  5'- cGGCgagGGCcccgacgacGUGGCGC-AGGCGCUGGCc -3'
miRNA:   3'- cUUGa--CCG---------UAUCGCGcUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 101441 0.74 0.499075
Target:  5'- ----aGGC--GGCGCGGuccAGCGCUGGCc -3'
miRNA:   3'- cuugaCCGuaUCGCGCU---UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 137052 0.74 0.489233
Target:  5'- cGGACcgucGGCA-GGCGCgGAGGCGCgGGCa -3'
miRNA:   3'- -CUUGa---CCGUaUCGCG-CUUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 99447 0.74 0.488254
Target:  5'- ----gGGCGgaagAGCGCGGgccgacccgcggcGGCGCUGGCc -3'
miRNA:   3'- cuugaCCGUa---UCGCGCU-------------UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 135086 0.73 0.570106
Target:  5'- cGGGCUcgcGGCccGGCgGCGGAGCGCgaGGCg -3'
miRNA:   3'- -CUUGA---CCGuaUCG-CGCUUCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 76753 0.73 0.570106
Target:  5'- cGGACgUGGCGcaccccgcguucuucGGCGCGGAcgcccccGCGCUGGCg -3'
miRNA:   3'- -CUUG-ACCGUa--------------UCGCGCUU-------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 74696 0.73 0.570106
Target:  5'- gGAGCUGGCcgccGCGCG-GGCGCggaaccgGGCc -3'
miRNA:   3'- -CUUGACCGuau-CGCGCuUCGCGa------CCG- -5'
23778 5' -54.9 NC_005261.1 + 124626 0.73 0.559769
Target:  5'- cAGC-GGCAUcuGCGCGAagaaGGCGCUGGg -3'
miRNA:   3'- cUUGaCCGUAu-CGCGCU----UCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 137761 0.73 0.549485
Target:  5'- -cGCgggGGCGgGGUGCGggGCGCgcccccgGGCc -3'
miRNA:   3'- cuUGa--CCGUaUCGCGCuuCGCGa------CCG- -5'
23778 5' -54.9 NC_005261.1 + 78 0.73 0.549485
Target:  5'- -cGCgggGGCGgGGUGCGggGCGCgcccccgGGCc -3'
miRNA:   3'- cuUGa--CCGUaUCGCGCuuCGCGa------CCG- -5'
23778 5' -54.9 NC_005261.1 + 27248 0.73 0.549485
Target:  5'- --cCUGGgGUGGgGCGggGUGUgcgGGCa -3'
miRNA:   3'- cuuGACCgUAUCgCGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 127334 0.73 0.539261
Target:  5'- -cGCgggGGCcggAGCgGCGggGCGCUGGg -3'
miRNA:   3'- cuUGa--CCGua-UCG-CGCuuCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 69751 0.73 0.539261
Target:  5'- gGAGgaGGCG-AGCGCGggGgGC-GGCg -3'
miRNA:   3'- -CUUgaCCGUaUCGCGCuuCgCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 46544 0.73 0.539261
Target:  5'- -cGCUGGCAgucgucccgcAGCGCG-AGCGCUGcuGCg -3'
miRNA:   3'- cuUGACCGUa---------UCGCGCuUCGCGAC--CG- -5'
23778 5' -54.9 NC_005261.1 + 66611 0.73 0.539261
Target:  5'- -uGCUGG-AUGGCGCGcguGCGCaUGGCc -3'
miRNA:   3'- cuUGACCgUAUCGCGCuu-CGCG-ACCG- -5'
23778 5' -54.9 NC_005261.1 + 84126 0.73 0.529102
Target:  5'- ----gGGCAgcGgGCGggGuCGCUGGCg -3'
miRNA:   3'- cuugaCCGUauCgCGCuuC-GCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 29525 0.73 0.529102
Target:  5'- --cCUGGCugcagAGCGCGAAGCucGCgGGCc -3'
miRNA:   3'- cuuGACCGua---UCGCGCUUCG--CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 97740 0.73 0.529102
Target:  5'- cGGCUGGCA-GGgGCGggGCggGCUcGGCg -3'
miRNA:   3'- cUUGACCGUaUCgCGCuuCG--CGA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.