miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 61230 0.71 0.643335
Target:  5'- -cGCUcGGCGUucGGCGCGAGcucgacuCGCUGGCc -3'
miRNA:   3'- cuUGA-CCGUA--UCGCGCUUc------GCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 14437 0.71 0.653826
Target:  5'- gGAACUcGGCucgcuCGCGggGCGCgcGGCg -3'
miRNA:   3'- -CUUGA-CCGuauc-GCGCuuCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 67086 0.71 0.653826
Target:  5'- cGGGC-GGUccAUGGCGCGAcgcGGUGCgGGCg -3'
miRNA:   3'- -CUUGaCCG--UAUCGCGCU---UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 133806 0.7 0.736311
Target:  5'- cGGGCU-GCucgacGGCGaCGAGGCGCUGcGCg -3'
miRNA:   3'- -CUUGAcCGua---UCGC-GCUUCGCGAC-CG- -5'
23778 5' -54.9 NC_005261.1 + 70693 0.7 0.736311
Target:  5'- ----aGGCGUccAGCGCGGcccGCGCgGGCa -3'
miRNA:   3'- cuugaCCGUA--UCGCGCUu--CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 55202 0.7 0.733296
Target:  5'- ----cGGCGUAGCGCGGauccggcggcccgaGGCgGCgagGGCg -3'
miRNA:   3'- cuugaCCGUAUCGCGCU--------------UCG-CGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 123162 0.7 0.726231
Target:  5'- aGGGCggGGCG-GGCGCGcGGGCGUggUGGCu -3'
miRNA:   3'- -CUUGa-CCGUaUCGCGC-UUCGCG--ACCG- -5'
23778 5' -54.9 NC_005261.1 + 114338 0.7 0.726231
Target:  5'- uGGACUGGCucgagcGGCGCGuGGCcGC-GGCc -3'
miRNA:   3'- -CUUGACCGua----UCGCGCuUCG-CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 77544 0.7 0.720141
Target:  5'- cGGGCUGGUacggcgccgccgccaGUGGCGcCGccGCGCccUGGCa -3'
miRNA:   3'- -CUUGACCG---------------UAUCGC-GCuuCGCG--ACCG- -5'
23778 5' -54.9 NC_005261.1 + 56114 0.7 0.720141
Target:  5'- cGAGC-GGCGggagcgcgccgcagGGCGgGggGCGCgGGCc -3'
miRNA:   3'- -CUUGaCCGUa-------------UCGCgCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 2393 0.7 0.716065
Target:  5'- -cGCUGGCGgcgAGCGCGcc-CGCgGGCc -3'
miRNA:   3'- cuUGACCGUa--UCGCGCuucGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 51768 0.7 0.695516
Target:  5'- aAGCUGGCGcUGGCcgGCGucGCccuGCUGGCc -3'
miRNA:   3'- cUUGACCGU-AUCG--CGCuuCG---CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 97115 0.7 0.702738
Target:  5'- cGGGCcgcGGCcggaGGCGCcgcggccacgcucgGAGGCGCUGGCg -3'
miRNA:   3'- -CUUGa--CCGua--UCGCG--------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 97193 0.7 0.702738
Target:  5'- cGGGCcgcGGCcggaAGCGCcgcggccacgcucgGAGGCGCUGGCg -3'
miRNA:   3'- -CUUGa--CCGua--UCGCG--------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 70971 0.7 0.705823
Target:  5'- cGAC-GGCGaagaagAGCGCGuGGCGCgcgGGCg -3'
miRNA:   3'- cUUGaCCGUa-----UCGCGCuUCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 28612 0.7 0.716065
Target:  5'- cGAGCUGGCGgAGC-UGuGGCGCaUGGUg -3'
miRNA:   3'- -CUUGACCGUaUCGcGCuUCGCG-ACCG- -5'
23778 5' -54.9 NC_005261.1 + 49579 0.69 0.746296
Target:  5'- uGAACacgGGCucggGGCGCGcGGCGCUG-Cu -3'
miRNA:   3'- -CUUGa--CCGua--UCGCGCuUCGCGACcG- -5'
23778 5' -54.9 NC_005261.1 + 5896 0.69 0.756176
Target:  5'- cGGCUGGC-UAGCuCGGccGGCcgGCUGGCu -3'
miRNA:   3'- cUUGACCGuAUCGcGCU--UCG--CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 38527 0.69 0.756176
Target:  5'- -cGCUGGCugcGCGCGccgggcacAGCGCcGGCg -3'
miRNA:   3'- cuUGACCGuauCGCGCu-------UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 71175 0.69 0.756176
Target:  5'- uGAACgcguccgGGCGcAGCucGCGggGCGC-GGCc -3'
miRNA:   3'- -CUUGa------CCGUaUCG--CGCuuCGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.