miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 128563 0.72 0.580488
Target:  5'- -cGCUGGCGcucuggGGCcCGGuuGCGCUGGCg -3'
miRNA:   3'- cuUGACCGUa-----UCGcGCUu-CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 96327 0.72 0.595088
Target:  5'- uGACUGGCcUGGCGCGGccgcGCGCaccugacgcccugacUGGCc -3'
miRNA:   3'- cUUGACCGuAUCGCGCUu---CGCG---------------ACCG- -5'
23778 5' -54.9 NC_005261.1 + 130759 0.72 0.600317
Target:  5'- -uGCUGGUAaccacggagcagcUGGCGCcccGCGCUGGCc -3'
miRNA:   3'- cuUGACCGU-------------AUCGCGcuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 20550 0.72 0.622334
Target:  5'- -uGCUGGaCGUGGCgGCGGgcugcgcagcGGCGCcGGCg -3'
miRNA:   3'- cuUGACC-GUAUCG-CGCU----------UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 33058 0.72 0.622334
Target:  5'- aGGACUcGGCGccggGGaCGCG--GCGCUGGCg -3'
miRNA:   3'- -CUUGA-CCGUa---UC-GCGCuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 89079 0.72 0.622334
Target:  5'- cGGCUGGUAccGGCuGCGGcccgggcGCGCUGGCg -3'
miRNA:   3'- cUUGACCGUa-UCG-CGCUu------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 72464 0.71 0.632835
Target:  5'- cGAGCgcGGCG-AGCGCG-AGCGC-GGCc -3'
miRNA:   3'- -CUUGa-CCGUaUCGCGCuUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 127754 0.71 0.632835
Target:  5'- gGAGCgGGCcgcggcgGGCGCGAAGaCGCccGGCu -3'
miRNA:   3'- -CUUGaCCGua-----UCGCGCUUC-GCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 122629 0.71 0.632835
Target:  5'- uGAAC-GGCG-AGCGCGAGGC-CcGGCg -3'
miRNA:   3'- -CUUGaCCGUaUCGCGCUUCGcGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 16175 0.71 0.632835
Target:  5'- gGGGCgcgGGCGUGGCGgGGgugGGCGggGGCc -3'
miRNA:   3'- -CUUGa--CCGUAUCGCgCU---UCGCgaCCG- -5'
23778 5' -54.9 NC_005261.1 + 61230 0.71 0.643335
Target:  5'- -cGCUcGGCGUucGGCGCGAGcucgacuCGCUGGCc -3'
miRNA:   3'- cuUGA-CCGUA--UCGCGCUUc------GCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 93676 0.71 0.653826
Target:  5'- cGGGC-GGCGgcGCcgGCGggGCGCcGGCg -3'
miRNA:   3'- -CUUGaCCGUauCG--CGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 81353 0.71 0.653826
Target:  5'- gGGGCgggGGCuu-GCGgGggGCGCcgGGCu -3'
miRNA:   3'- -CUUGa--CCGuauCGCgCuuCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 67086 0.71 0.653826
Target:  5'- cGGGC-GGUccAUGGCGCGAcgcGGUGCgGGCg -3'
miRNA:   3'- -CUUGaCCG--UAUCGCGCU---UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 14437 0.71 0.653826
Target:  5'- gGAACUcGGCucgcuCGCGggGCGCgcGGCg -3'
miRNA:   3'- -CUUGA-CCGuauc-GCGCuuCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 68114 0.71 0.664299
Target:  5'- cGGGCUGGagcuGCGCGGgccgcGGCGC-GGCg -3'
miRNA:   3'- -CUUGACCguauCGCGCU-----UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 111967 0.71 0.664299
Target:  5'- --cCUGGCcaAGCucgaagGCGggGCGCUGGa -3'
miRNA:   3'- cuuGACCGuaUCG------CGCuuCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 132597 0.71 0.664299
Target:  5'- cGGACgcccGGCccGGCGagccgccagGggGCGCUGGCg -3'
miRNA:   3'- -CUUGa---CCGuaUCGCg--------CuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 50843 0.71 0.664299
Target:  5'- cGAGCUGGCgccuGUGGCucgcccaggucgGCGccuucgccGCGCUGGCg -3'
miRNA:   3'- -CUUGACCG----UAUCG------------CGCuu------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 118666 0.71 0.674745
Target:  5'- -cGCUcggGGCugAGgGCGGcgGGCGCUGGCg -3'
miRNA:   3'- cuUGA---CCGuaUCgCGCU--UCGCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.