miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 118666 0.71 0.674745
Target:  5'- -cGCUcggGGCugAGgGCGGcgGGCGCUGGCg -3'
miRNA:   3'- cuUGA---CCGuaUCgCGCU--UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 133259 0.71 0.684115
Target:  5'- -cGCaGGCGgcGCGCGAguaccagGGCGCcGGCg -3'
miRNA:   3'- cuUGaCCGUauCGCGCU-------UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 34580 0.71 0.684115
Target:  5'- -uGCUGGCcgAGUGCGGcuucgacgacgacGGC-CUGGCc -3'
miRNA:   3'- cuUGACCGuaUCGCGCU-------------UCGcGACCG- -5'
23778 5' -54.9 NC_005261.1 + 51768 0.7 0.695516
Target:  5'- aAGCUGGCGcUGGCcgGCGucGCccuGCUGGCc -3'
miRNA:   3'- cUUGACCGU-AUCG--CGCuuCG---CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 97115 0.7 0.702738
Target:  5'- cGGGCcgcGGCcggaGGCGCcgcggccacgcucgGAGGCGCUGGCg -3'
miRNA:   3'- -CUUGa--CCGua--UCGCG--------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 97193 0.7 0.702738
Target:  5'- cGGGCcgcGGCcggaAGCGCcgcggccacgcucgGAGGCGCUGGCg -3'
miRNA:   3'- -CUUGa--CCGua--UCGCG--------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 70971 0.7 0.705823
Target:  5'- cGAC-GGCGaagaagAGCGCGuGGCGCgcgGGCg -3'
miRNA:   3'- cUUGaCCGUa-----UCGCGCuUCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 2393 0.7 0.716065
Target:  5'- -cGCUGGCGgcgAGCGCGcc-CGCgGGCc -3'
miRNA:   3'- cuUGACCGUa--UCGCGCuucGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 28612 0.7 0.716065
Target:  5'- cGAGCUGGCGgAGC-UGuGGCGCaUGGUg -3'
miRNA:   3'- -CUUGACCGUaUCGcGCuUCGCG-ACCG- -5'
23778 5' -54.9 NC_005261.1 + 56114 0.7 0.720141
Target:  5'- cGAGC-GGCGggagcgcgccgcagGGCGgGggGCGCgGGCc -3'
miRNA:   3'- -CUUGaCCGUa-------------UCGCgCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 77544 0.7 0.720141
Target:  5'- cGGGCUGGUacggcgccgccgccaGUGGCGcCGccGCGCccUGGCa -3'
miRNA:   3'- -CUUGACCG---------------UAUCGC-GCuuCGCG--ACCG- -5'
23778 5' -54.9 NC_005261.1 + 123162 0.7 0.726231
Target:  5'- aGGGCggGGCG-GGCGCGcGGGCGUggUGGCu -3'
miRNA:   3'- -CUUGa-CCGUaUCGCGC-UUCGCG--ACCG- -5'
23778 5' -54.9 NC_005261.1 + 114338 0.7 0.726231
Target:  5'- uGGACUGGCucgagcGGCGCGuGGCcGC-GGCc -3'
miRNA:   3'- -CUUGACCGua----UCGCGCuUCG-CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 55202 0.7 0.733296
Target:  5'- ----cGGCGUAGCGCGGauccggcggcccgaGGCgGCgagGGCg -3'
miRNA:   3'- cuugaCCGUAUCGCGCU--------------UCG-CGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 70693 0.7 0.736311
Target:  5'- ----aGGCGUccAGCGCGGcccGCGCgGGCa -3'
miRNA:   3'- cuugaCCGUA--UCGCGCUu--CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 133806 0.7 0.736311
Target:  5'- cGGGCU-GCucgacGGCGaCGAGGCGCUGcGCg -3'
miRNA:   3'- -CUUGAcCGua---UCGC-GCUUCGCGAC-CG- -5'
23778 5' -54.9 NC_005261.1 + 58845 0.69 0.745302
Target:  5'- -cGCUGGgucucccgcacguCGUAGUG-GAAGCGCUGGg -3'
miRNA:   3'- cuUGACC-------------GUAUCGCgCUUCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 49579 0.69 0.746296
Target:  5'- uGAACacgGGCucggGGCGCGcGGCGCUG-Cu -3'
miRNA:   3'- -CUUGa--CCGua--UCGCGCuUCGCGACcG- -5'
23778 5' -54.9 NC_005261.1 + 38527 0.69 0.756176
Target:  5'- -cGCUGGCugcGCGCGccgggcacAGCGCcGGCg -3'
miRNA:   3'- cuUGACCGuauCGCGCu-------UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 71175 0.69 0.756176
Target:  5'- uGAACgcguccgGGCGcAGCucGCGggGCGC-GGCc -3'
miRNA:   3'- -CUUGa------CCGUaUCG--CGCuuCGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.