miRNA display CGI


Results 81 - 100 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 135743 0.69 0.756176
Target:  5'- -uGCUGGCGcgccucagccGCGCGguGCGCUccGGCg -3'
miRNA:   3'- cuUGACCGUau--------CGCGCuuCGCGA--CCG- -5'
23778 5' -54.9 NC_005261.1 + 71175 0.69 0.756176
Target:  5'- uGAACgcguccgGGCGcAGCucGCGggGCGC-GGCc -3'
miRNA:   3'- -CUUGa------CCGUaUCG--CGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 38527 0.69 0.756176
Target:  5'- -cGCUGGCugcGCGCGccgggcacAGCGCcGGCg -3'
miRNA:   3'- cuUGACCGuauCGCGCu-------UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 5896 0.69 0.756176
Target:  5'- cGGCUGGC-UAGCuCGGccGGCcgGCUGGCu -3'
miRNA:   3'- cUUGACCGuAUCGcGCU--UCG--CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 84270 0.69 0.76594
Target:  5'- ----cGGCAUGGCGC-AGGUGCcgccGGCg -3'
miRNA:   3'- cuugaCCGUAUCGCGcUUCGCGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 87874 0.69 0.76594
Target:  5'- aGAGgUGGCGgagagaGGCGCGGAGaggGCgGGCc -3'
miRNA:   3'- -CUUgACCGUa-----UCGCGCUUCg--CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 90888 0.69 0.76594
Target:  5'- uGGGCgacGGCAUGGCGCGGcaggucucggcGGCGCUc-- -3'
miRNA:   3'- -CUUGa--CCGUAUCGCGCU-----------UCGCGAccg -5'
23778 5' -54.9 NC_005261.1 + 44207 0.69 0.775579
Target:  5'- cGAGCUgcaGGCGgcccgggAGCGCGc-GCuGCUGGCc -3'
miRNA:   3'- -CUUGA---CCGUa------UCGCGCuuCG-CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 97572 0.69 0.775579
Target:  5'- gGggUUGGCucgGUGGCGCGGgcGGaGCgGGCg -3'
miRNA:   3'- -CuuGACCG---UAUCGCGCU--UCgCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 23984 0.69 0.775579
Target:  5'- cGGGCgGGC-UAGUcgcgGCGGAGCGCUGcuGCu -3'
miRNA:   3'- -CUUGaCCGuAUCG----CGCUUCGCGAC--CG- -5'
23778 5' -54.9 NC_005261.1 + 3890 0.69 0.775579
Target:  5'- cAGCUcGGCG-AGCGCG--GCGCgGGCg -3'
miRNA:   3'- cUUGA-CCGUaUCGCGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 23574 0.69 0.775579
Target:  5'- aGGGCUGGCcguggcucAUGGCgGCGGuGGUGgUGGCu -3'
miRNA:   3'- -CUUGACCG--------UAUCG-CGCU-UCGCgACCG- -5'
23778 5' -54.9 NC_005261.1 + 108799 0.69 0.775579
Target:  5'- --gUUGGCAgcGUGCGccaGGGCGCUGaGCc -3'
miRNA:   3'- cuuGACCGUauCGCGC---UUCGCGAC-CG- -5'
23778 5' -54.9 NC_005261.1 + 33822 0.69 0.784139
Target:  5'- uGGGC-GGCcggggGGCGCGGgcccccuGGCGCUGGg -3'
miRNA:   3'- -CUUGaCCGua---UCGCGCU-------UCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 126695 0.69 0.785083
Target:  5'- aGGCcGGCGguGCGgGAAGCgGCUGGUu -3'
miRNA:   3'- cUUGaCCGUauCGCgCUUCG-CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 74940 0.69 0.785083
Target:  5'- gGGACU-GC--GGCGCGGGcGCGCUcGGCg -3'
miRNA:   3'- -CUUGAcCGuaUCGCGCUU-CGCGA-CCG- -5'
23778 5' -54.9 NC_005261.1 + 134187 0.69 0.785083
Target:  5'- -uGCggagGGCcUGGCGCGGcucGGCGCgcgGGUc -3'
miRNA:   3'- cuUGa---CCGuAUCGCGCU---UCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 32057 0.69 0.794443
Target:  5'- aGGACaUGGCcgcgcagAGCGCG--GCGCUGGg -3'
miRNA:   3'- -CUUG-ACCGua-----UCGCGCuuCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 48443 0.69 0.794443
Target:  5'- -cGCgGuGCGUGGCGCGGccGGCGC-GGUc -3'
miRNA:   3'- cuUGaC-CGUAUCGCGCU--UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 106110 0.69 0.794443
Target:  5'- cGGCcGGCGUcgccGGCGCGcgcGCGCcGGCa -3'
miRNA:   3'- cUUGaCCGUA----UCGCGCuu-CGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.