miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 49390 0.66 0.8923
Target:  5'- -cGCUGGCc-AGCGUGcAGCGCUcgaagaGGUg -3'
miRNA:   3'- cuUGACCGuaUCGCGCuUCGCGA------CCG- -5'
23778 5' -54.9 NC_005261.1 + 77441 0.66 0.8923
Target:  5'- cAGCUGGuCGUcagccaGGCcCGggGCGC-GGCu -3'
miRNA:   3'- cUUGACC-GUA------UCGcGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 80297 0.66 0.8923
Target:  5'- ----cGuGCGUGGCGuUGAAGCGCUcacGGUa -3'
miRNA:   3'- cuugaC-CGUAUCGC-GCUUCGCGA---CCG- -5'
23778 5' -54.9 NC_005261.1 + 88448 0.66 0.8923
Target:  5'- -uGCUGGCcgcgccGCGUG-AGCGUgugGGCg -3'
miRNA:   3'- cuUGACCGuau---CGCGCuUCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 104663 0.67 0.885329
Target:  5'- -cGCUGGCGggcguguGCuGCGGcAGCGCcugGGCc -3'
miRNA:   3'- cuUGACCGUau-----CG-CGCU-UCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 133337 0.67 0.885329
Target:  5'- -uGCcGGCAcgcGCGCGcGGCGCUGccGCg -3'
miRNA:   3'- cuUGaCCGUau-CGCGCuUCGCGAC--CG- -5'
23778 5' -54.9 NC_005261.1 + 94773 0.67 0.885329
Target:  5'- aGGACgUGGCGccGCGCGAgcucgaGGUGCUGcuGCc -3'
miRNA:   3'- -CUUG-ACCGUauCGCGCU------UCGCGAC--CG- -5'
23778 5' -54.9 NC_005261.1 + 118206 0.67 0.885329
Target:  5'- --cCUGccGCGcuGCGCGggGCGCUgacGGCc -3'
miRNA:   3'- cuuGAC--CGUauCGCGCuuCGCGA---CCG- -5'
23778 5' -54.9 NC_005261.1 + 75816 0.67 0.881033
Target:  5'- -cGCUGGUgcccGGCGCGGccgcgcccggggaggGGCGCgcGGCg -3'
miRNA:   3'- cuUGACCGua--UCGCGCU---------------UCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 48118 0.67 0.878122
Target:  5'- aGACgGGCAUGGCGC---GCGCgGGa -3'
miRNA:   3'- cUUGaCCGUAUCGCGcuuCGCGaCCg -5'
23778 5' -54.9 NC_005261.1 + 17542 0.67 0.878122
Target:  5'- aAACUGGgc-GGCGCGGgcccgccguucGGCGgUGGCc -3'
miRNA:   3'- cUUGACCguaUCGCGCU-----------UCGCgACCG- -5'
23778 5' -54.9 NC_005261.1 + 81492 0.67 0.878122
Target:  5'- aGGGCcgcGGC-UAGCGCGgcGCGCgcgccgccgccGGCg -3'
miRNA:   3'- -CUUGa--CCGuAUCGCGCuuCGCGa----------CCG- -5'
23778 5' -54.9 NC_005261.1 + 108754 0.67 0.878122
Target:  5'- ----cGGCGUccgcGGCGCGccGCGCcacGGCa -3'
miRNA:   3'- cuugaCCGUA----UCGCGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 47531 0.67 0.878122
Target:  5'- cGAACUcgacGGCGUucccgGGCGCGgcGaaGUUGGCg -3'
miRNA:   3'- -CUUGA----CCGUA-----UCGCGCuuCg-CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 118876 0.67 0.878122
Target:  5'- --cCUGGCcucGGCcaccGCGGGcGCGCUGGUg -3'
miRNA:   3'- cuuGACCGua-UCG----CGCUU-CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 95672 0.67 0.877388
Target:  5'- cGGGCgcgGGUGUgagcacgugcacgAGCGCGAGuauGCGCgcgGGCu -3'
miRNA:   3'- -CUUGa--CCGUA-------------UCGCGCUU---CGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 71409 0.67 0.870684
Target:  5'- aGGC-GGCGUccGGCGCGggGC-CcGGCc -3'
miRNA:   3'- cUUGaCCGUA--UCGCGCuuCGcGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 12304 0.67 0.870684
Target:  5'- -cGCgGGCAcgGGCGCGuAGCcgGCgGGCg -3'
miRNA:   3'- cuUGaCCGUa-UCGCGCuUCG--CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 32375 0.67 0.870684
Target:  5'- -cGCUGGUgcaGGCGCGgcGCgGC-GGCg -3'
miRNA:   3'- cuUGACCGua-UCGCGCuuCG-CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 97631 0.67 0.869928
Target:  5'- gGAGCgGGCGgagcgGGCGCGGgugccgcaccuggGGgGCcGGCg -3'
miRNA:   3'- -CUUGaCCGUa----UCGCGCU-------------UCgCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.