Results 61 - 80 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 112346 | 0.67 | 0.863021 |
Target: 5'- aAGCggGGCAUcaugGGCGCgcuGAAGCuGCUGGa -3' miRNA: 3'- cUUGa-CCGUA----UCGCG---CUUCG-CGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 3544 | 0.67 | 0.863021 |
Target: 5'- ----cGGCGcgcAGCGCGGcgGGCGC-GGCg -3' miRNA: 3'- cuugaCCGUa--UCGCGCU--UCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 126956 | 0.67 | 0.863021 |
Target: 5'- cGGGCgcgggGGCGgcAGCGCGAAccGCGCgGGg -3' miRNA: 3'- -CUUGa----CCGUa-UCGCGCUU--CGCGaCCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 88809 | 0.67 | 0.863021 |
Target: 5'- aGGACgccGGCGgcggGGCgGCGgcGCGCgccGGCc -3' miRNA: 3'- -CUUGa--CCGUa---UCG-CGCuuCGCGa--CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 101695 | 0.67 | 0.863021 |
Target: 5'- aAGCgGGCGUGGU-CGAAGCGCUccaGCu -3' miRNA: 3'- cUUGaCCGUAUCGcGCUUCGCGAc--CG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 31574 | 0.67 | 0.863021 |
Target: 5'- uGGACgGGCGcgccggacgugAGCGCGcucGGCGCgcagGGCg -3' miRNA: 3'- -CUUGaCCGUa----------UCGCGCu--UCGCGa---CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 1001 | 0.67 | 0.863021 |
Target: 5'- aGACgggGGCGgggGGCGgGggGCGggugGGCu -3' miRNA: 3'- cUUGa--CCGUa--UCGCgCuuCGCga--CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 90401 | 0.67 | 0.859894 |
Target: 5'- gGGGCUGGCGcccGGCGCGGAcuaCGCgacguucgacgugGGCg -3' miRNA: 3'- -CUUGACCGUa--UCGCGCUUc--GCGa------------CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 121111 | 0.67 | 0.855139 |
Target: 5'- -uGCgGGUccucuagGGCGCgGAGGCGCgGGCg -3' miRNA: 3'- cuUGaCCGua-----UCGCG-CUUCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 77199 | 0.67 | 0.855139 |
Target: 5'- -uGCaGGCG-AGCGCGGuguuccCGCUGGCc -3' miRNA: 3'- cuUGaCCGUaUCGCGCUuc----GCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 38270 | 0.67 | 0.855139 |
Target: 5'- uGGGCUGGgGgcggcUGGUGCacgcGGUGCUGGCc -3' miRNA: 3'- -CUUGACCgU-----AUCGCGcu--UCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 98349 | 0.67 | 0.855139 |
Target: 5'- cGACgcgggGGCGggggugGGCGCG-GGCuCUGGCg -3' miRNA: 3'- cUUGa----CCGUa-----UCGCGCuUCGcGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 62808 | 0.67 | 0.855139 |
Target: 5'- cGGGCUGGgcCAUAucgccGCGCGggGCaCcGGCg -3' miRNA: 3'- -CUUGACC--GUAU-----CGCGCuuCGcGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 41459 | 0.67 | 0.855139 |
Target: 5'- uGGACUGGCGUccuggucgcGGCucuGCGAGuaGUUGGUa -3' miRNA: 3'- -CUUGACCGUA---------UCG---CGCUUcgCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 96958 | 0.67 | 0.854339 |
Target: 5'- cGGCggGGCAgccgccgGGCGCGAuucacgcggccucGGCGC-GGCu -3' miRNA: 3'- cUUGa-CCGUa------UCGCGCU-------------UCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 15533 | 0.67 | 0.847044 |
Target: 5'- gGAGCggaaGGCGUcguuCGCGAcGCGCgGGCa -3' miRNA: 3'- -CUUGa---CCGUAuc--GCGCUuCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 74877 | 0.67 | 0.847044 |
Target: 5'- cGGACgcGGCGgcGGCgGCGGAgucggcggcccGCGCUGGCc -3' miRNA: 3'- -CUUGa-CCGUa-UCG-CGCUU-----------CGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 20832 | 0.67 | 0.847044 |
Target: 5'- uGAACUGcGCGUucGCG-GggGCaGCgUGGCg -3' miRNA: 3'- -CUUGAC-CGUAu-CGCgCuuCG-CG-ACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 128105 | 0.67 | 0.847044 |
Target: 5'- cGAGC-GGCGcGGCGCGggGUcg-GGCc -3' miRNA: 3'- -CUUGaCCGUaUCGCGCuuCGcgaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 11468 | 0.67 | 0.847044 |
Target: 5'- gGAGCgGGCGcggaGGgGCGggGCGggGGUg -3' miRNA: 3'- -CUUGaCCGUa---UCgCGCuuCGCgaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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