miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 78 0.73 0.549485
Target:  5'- -cGCgggGGCGgGGUGCGggGCGCgcccccgGGCc -3'
miRNA:   3'- cuUGa--CCGUaUCGCGCuuCGCGa------CCG- -5'
23778 5' -54.9 NC_005261.1 + 147 0.78 0.300572
Target:  5'- gGGGCUGGCAgGGCugGCGGAGUuggcgggGCUGGCg -3'
miRNA:   3'- -CUUGACCGUaUCG--CGCUUCG-------CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 1001 0.67 0.863021
Target:  5'- aGACgggGGCGgggGGCGgGggGCGggugGGCu -3'
miRNA:   3'- cUUGa--CCGUa--UCGCgCuuCGCga--CCG- -5'
23778 5' -54.9 NC_005261.1 + 1048 0.81 0.193019
Target:  5'- cGGGCggcGGCGUuagcGGCGCGggGgGCUGGCc -3'
miRNA:   3'- -CUUGa--CCGUA----UCGCGCuuCgCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 1821 0.66 0.909911
Target:  5'- aGAGCcGcGCGUAagcggccucggcgcGCGCGAAgGCGCcgGGCc -3'
miRNA:   3'- -CUUGaC-CGUAU--------------CGCGCUU-CGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 2393 0.7 0.716065
Target:  5'- -cGCUGGCGgcgAGCGCGcc-CGCgGGCc -3'
miRNA:   3'- cuUGACCGUa--UCGCGCuucGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 3544 0.67 0.863021
Target:  5'- ----cGGCGcgcAGCGCGGcgGGCGC-GGCg -3'
miRNA:   3'- cuugaCCGUa--UCGCGCU--UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 3890 0.69 0.775579
Target:  5'- cAGCUcGGCG-AGCGCG--GCGCgGGCg -3'
miRNA:   3'- cUUGA-CCGUaUCGCGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 5896 0.69 0.756176
Target:  5'- cGGCUGGC-UAGCuCGGccGGCcgGCUGGCu -3'
miRNA:   3'- cUUGACCGuAUCGcGCU--UCG--CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 5942 0.69 0.794443
Target:  5'- aGGCUGGC-UAGCuaGGccGGCugGCUGGCu -3'
miRNA:   3'- cUUGACCGuAUCGcgCU--UCG--CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 11468 0.67 0.847044
Target:  5'- gGAGCgGGCGcggaGGgGCGggGCGggGGUg -3'
miRNA:   3'- -CUUGaCCGUa---UCgCGCuuCGCgaCCG- -5'
23778 5' -54.9 NC_005261.1 + 12304 0.67 0.870684
Target:  5'- -cGCgGGCAcgGGCGCGuAGCcgGCgGGCg -3'
miRNA:   3'- cuUGaCCGUa-UCGCGCuUCG--CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 13102 0.66 0.911757
Target:  5'- cGGGCUcggcucgggGGCGUcggcGGcCGCGggGCGCgugUGGUc -3'
miRNA:   3'- -CUUGA---------CCGUA----UC-GCGCuuCGCG---ACCG- -5'
23778 5' -54.9 NC_005261.1 + 13684 0.75 0.432253
Target:  5'- gGGGCgcgcgGGCGUGGgGCGggGCggGCUGGg -3'
miRNA:   3'- -CUUGa----CCGUAUCgCGCuuCG--CGACCg -5'
23778 5' -54.9 NC_005261.1 + 14437 0.71 0.653826
Target:  5'- gGAACUcGGCucgcuCGCGggGCGCgcGGCg -3'
miRNA:   3'- -CUUGA-CCGuauc-GCGCuuCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 14959 0.68 0.803648
Target:  5'- cGAGCgGGCGUGccuggggcgacuGCGCGGccGCGCcGGCc -3'
miRNA:   3'- -CUUGaCCGUAU------------CGCGCUu-CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 15533 0.67 0.847044
Target:  5'- gGAGCggaaGGCGUcguuCGCGAcGCGCgGGCa -3'
miRNA:   3'- -CUUGa---CCGUAuc--GCGCUuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 16175 0.71 0.632835
Target:  5'- gGGGCgcgGGCGUGGCGgGGgugGGCGggGGCc -3'
miRNA:   3'- -CUUGa--CCGUAUCGCgCU---UCGCgaCCG- -5'
23778 5' -54.9 NC_005261.1 + 17542 0.67 0.878122
Target:  5'- aAACUGGgc-GGCGCGGgcccgccguucGGCGgUGGCc -3'
miRNA:   3'- cUUGACCguaUCGCGCU-----------UCGCgACCG- -5'
23778 5' -54.9 NC_005261.1 + 19066 0.66 0.905517
Target:  5'- cGGGCUGcGCGgcucucGGCGCGugcuugcguGGCGUUGGa -3'
miRNA:   3'- -CUUGAC-CGUa-----UCGCGCu--------UCGCGACCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.