miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 20550 0.72 0.622334
Target:  5'- -uGCUGGaCGUGGCgGCGGgcugcgcagcGGCGCcGGCg -3'
miRNA:   3'- cuUGACC-GUAUCG-CGCU----------UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 20832 0.67 0.847044
Target:  5'- uGAACUGcGCGUucGCG-GggGCaGCgUGGCg -3'
miRNA:   3'- -CUUGAC-CGUAu-CGCgCuuCG-CG-ACCG- -5'
23778 5' -54.9 NC_005261.1 + 21186 0.79 0.24822
Target:  5'- -cGCUGGCGcgAGCGCGGccgcGGaCGCUGGCc -3'
miRNA:   3'- cuUGACCGUa-UCGCGCU----UC-GCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 23574 0.69 0.775579
Target:  5'- aGGGCUGGCcguggcucAUGGCgGCGGuGGUGgUGGCu -3'
miRNA:   3'- -CUUGACCG--------UAUCG-CGCU-UCGCgACCG- -5'
23778 5' -54.9 NC_005261.1 + 23984 0.69 0.775579
Target:  5'- cGGGCgGGC-UAGUcgcgGCGGAGCGCUGcuGCu -3'
miRNA:   3'- -CUUGaCCGuAUCG----CGCUUCGCGAC--CG- -5'
23778 5' -54.9 NC_005261.1 + 24136 0.67 0.847044
Target:  5'- gGGGCUGG-GUGG-GCGggGCucacCUGGCg -3'
miRNA:   3'- -CUUGACCgUAUCgCGCuuCGc---GACCG- -5'
23778 5' -54.9 NC_005261.1 + 27248 0.73 0.549485
Target:  5'- --cCUGGgGUGGgGCGggGUGUgcgGGCa -3'
miRNA:   3'- cuuGACCgUAUCgCGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 27355 0.66 0.917748
Target:  5'- gGAGC-GGCGccggaccGGCGCGAGGC-CggugGGCa -3'
miRNA:   3'- -CUUGaCCGUa------UCGCGCUUCGcGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 28571 0.69 0.756176
Target:  5'- -cGCcgGGCcgaGGCGCGcGAGCGCcGGCg -3'
miRNA:   3'- cuUGa-CCGua-UCGCGC-UUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 28612 0.7 0.716065
Target:  5'- cGAGCUGGCGgAGC-UGuGGCGCaUGGUg -3'
miRNA:   3'- -CUUGACCGUaUCGcGCuUCGCG-ACCG- -5'
23778 5' -54.9 NC_005261.1 + 28770 0.66 0.905517
Target:  5'- gGGGCgccugGGCcgcGGCGCG-GGCGCUcgcGGCc -3'
miRNA:   3'- -CUUGa----CCGua-UCGCGCuUCGCGA---CCG- -5'
23778 5' -54.9 NC_005261.1 + 29525 0.73 0.529102
Target:  5'- --cCUGGCugcagAGCGCGAAGCucGCgGGCc -3'
miRNA:   3'- cuuGACCGua---UCGCGCUUCG--CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 29928 0.75 0.449888
Target:  5'- cGAGCUGGCGgacgcuGCgcugcggccugccGCGAGGCGCUagaGGCg -3'
miRNA:   3'- -CUUGACCGUau----CG-------------CGCUUCGCGA---CCG- -5'
23778 5' -54.9 NC_005261.1 + 30220 0.75 0.441485
Target:  5'- -cGCUGGC--GGCGCGAaccguGGCcccGCUGGCg -3'
miRNA:   3'- cuUGACCGuaUCGCGCU-----UCG---CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 31246 0.75 0.429506
Target:  5'- cGAGCccUGGCGcccGGCGCucgccuucgaccccGAGGCGCUGGCc -3'
miRNA:   3'- -CUUG--ACCGUa--UCGCG--------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 31437 0.68 0.838744
Target:  5'- -cGCUGGCGgcGCcgcccgGCGAggacgAGCGCcGGCg -3'
miRNA:   3'- cuUGACCGUauCG------CGCU-----UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 31574 0.67 0.863021
Target:  5'- uGGACgGGCGcgccggacgugAGCGCGcucGGCGCgcagGGCg -3'
miRNA:   3'- -CUUGaCCGUa----------UCGCGCu--UCGCGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 31676 0.66 0.905517
Target:  5'- cGGCUGGCcgcGGCGCGGcGGCgGCUGa- -3'
miRNA:   3'- cUUGACCGua-UCGCGCU-UCG-CGACcg -5'
23778 5' -54.9 NC_005261.1 + 31728 0.68 0.821558
Target:  5'- cGAACUGGCc--GCGCGAuggcccGGcCGUcgGGCa -3'
miRNA:   3'- -CUUGACCGuauCGCGCU------UC-GCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 31814 0.75 0.423136
Target:  5'- -cGCUGGCcugAGCgGCGc-GCGCUGGCg -3'
miRNA:   3'- cuUGACCGua-UCG-CGCuuCGCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.