miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 32057 0.69 0.794443
Target:  5'- aGGACaUGGCcgcgcagAGCGCG--GCGCUGGg -3'
miRNA:   3'- -CUUG-ACCGua-----UCGCGCuuCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 32185 0.68 0.838744
Target:  5'- -uGCgGGCGgcGCGCGcuGGaGCUGGCg -3'
miRNA:   3'- cuUGaCCGUauCGCGCu-UCgCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 32375 0.67 0.870684
Target:  5'- -cGCUGGUgcaGGCGCGgcGCgGC-GGCg -3'
miRNA:   3'- cuUGACCGua-UCGCGCuuCG-CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 33058 0.72 0.622334
Target:  5'- aGGACUcGGCGccggGGaCGCG--GCGCUGGCg -3'
miRNA:   3'- -CUUGA-CCGUa---UC-GCGCuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 33822 0.69 0.784139
Target:  5'- uGGGC-GGCcggggGGCGCGGgcccccuGGCGCUGGg -3'
miRNA:   3'- -CUUGaCCGua---UCGCGCU-------UCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 34580 0.71 0.684115
Target:  5'- -uGCUGGCcgAGUGCGGcuucgacgacgacGGC-CUGGCc -3'
miRNA:   3'- cuUGACCGuaUCGCGCU-------------UCGcGACCG- -5'
23778 5' -54.9 NC_005261.1 + 37145 0.66 0.909911
Target:  5'- cGAgUGGCAUGgcaccagcgcucgcGCGCGcuuGCGCcugGGCg -3'
miRNA:   3'- cUUgACCGUAU--------------CGCGCuu-CGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 37875 0.68 0.812689
Target:  5'- --cCUGGCGgcGCGUgcuGGAGCccgaGCUGGCc -3'
miRNA:   3'- cuuGACCGUauCGCG---CUUCG----CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 38270 0.67 0.855139
Target:  5'- uGGGCUGGgGgcggcUGGUGCacgcGGUGCUGGCc -3'
miRNA:   3'- -CUUGACCgU-----AUCGCGcu--UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 38527 0.69 0.756176
Target:  5'- -cGCUGGCugcGCGCGccgggcacAGCGCcGGCg -3'
miRNA:   3'- cuUGACCGuauCGCGCu-------UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 38595 0.68 0.830246
Target:  5'- -uGCUGGCGgccCGCGGcuggcgGGUGUUGGCc -3'
miRNA:   3'- cuUGACCGUaucGCGCU------UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 41459 0.67 0.855139
Target:  5'- uGGACUGGCGUccuggucgcGGCucuGCGAGuaGUUGGUa -3'
miRNA:   3'- -CUUGACCGUA---------UCG---CGCUUcgCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 41748 0.66 0.917748
Target:  5'- --uCUGGCAcgacaaacuugUccacgAGCGCGAGGUGCUcuuccgucacgGGCa -3'
miRNA:   3'- cuuGACCGU-----------A-----UCGCGCUUCGCGA-----------CCG- -5'
23778 5' -54.9 NC_005261.1 + 43341 0.68 0.830246
Target:  5'- aGACUGGCucguGUGCcuGGgGCUGGUg -3'
miRNA:   3'- cUUGACCGuau-CGCGcuUCgCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 43440 0.76 0.405252
Target:  5'- gGAGCUGGCucGGCGCcugGAcgucgccgggcgGGUGCUGGCg -3'
miRNA:   3'- -CUUGACCGuaUCGCG---CU------------UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 43780 0.66 0.911757
Target:  5'- ----gGGCGgcGCGCGGAGgGCgccgcgGGUg -3'
miRNA:   3'- cuugaCCGUauCGCGCUUCgCGa-----CCG- -5'
23778 5' -54.9 NC_005261.1 + 44207 0.69 0.775579
Target:  5'- cGAGCUgcaGGCGgcccgggAGCGCGc-GCuGCUGGCc -3'
miRNA:   3'- -CUUGA---CCGUa------UCGCGCuuCG-CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 45617 0.66 0.89903
Target:  5'- cGGC-GGCGcGGCGCGgcGCgGCgGGCc -3'
miRNA:   3'- cUUGaCCGUaUCGCGCuuCG-CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 46544 0.73 0.539261
Target:  5'- -cGCUGGCAgucgucccgcAGCGCG-AGCGCUGcuGCg -3'
miRNA:   3'- cuUGACCGUa---------UCGCGCuUCGCGAC--CG- -5'
23778 5' -54.9 NC_005261.1 + 47531 0.67 0.878122
Target:  5'- cGAACUcgacGGCGUucccgGGCGCGgcGaaGUUGGCg -3'
miRNA:   3'- -CUUGA----CCGUA-----UCGCGCuuCg-CGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.