miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 47890 0.66 0.917748
Target:  5'- gGAGCggcGGCGgcGGCGCGAGguccuccaaccGCGC-GGCc -3'
miRNA:   3'- -CUUGa--CCGUa-UCGCGCUU-----------CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 48118 0.67 0.878122
Target:  5'- aGACgGGCAUGGCGC---GCGCgGGa -3'
miRNA:   3'- cUUGaCCGUAUCGCGcuuCGCGaCCg -5'
23778 5' -54.9 NC_005261.1 + 48443 0.69 0.794443
Target:  5'- -cGCgGuGCGUGGCGCGGccGGCGC-GGUc -3'
miRNA:   3'- cuUGaC-CGUAUCGCGCU--UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 49390 0.66 0.8923
Target:  5'- -cGCUGGCc-AGCGUGcAGCGCUcgaagaGGUg -3'
miRNA:   3'- cuUGACCGuaUCGCGCuUCGCGA------CCG- -5'
23778 5' -54.9 NC_005261.1 + 49579 0.69 0.746296
Target:  5'- uGAACacgGGCucggGGCGCGcGGCGCUG-Cu -3'
miRNA:   3'- -CUUGa--CCGua--UCGCGCuUCGCGACcG- -5'
23778 5' -54.9 NC_005261.1 + 50843 0.71 0.664299
Target:  5'- cGAGCUGGCgccuGUGGCucgcccaggucgGCGccuucgccGCGCUGGCg -3'
miRNA:   3'- -CUUGACCG----UAUCG------------CGCuu------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 50993 0.66 0.89903
Target:  5'- cGAC-GGC--GGCGCGuGGGCGC-GGCg -3'
miRNA:   3'- cUUGaCCGuaUCGCGC-UUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 51768 0.7 0.695516
Target:  5'- aAGCUGGCGcUGGCcgGCGucGCccuGCUGGCc -3'
miRNA:   3'- cUUGACCGU-AUCG--CGCuuCG---CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 53969 0.68 0.803648
Target:  5'- cGGgUGGCAaaagAGCGCGGcgagcuccAGCGCgcGGCg -3'
miRNA:   3'- cUUgACCGUa---UCGCGCU--------UCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 54470 0.66 0.905517
Target:  5'- aGGGuCUGGCAUccgGGCGUcGGGCgGCaGGCg -3'
miRNA:   3'- -CUU-GACCGUA---UCGCGcUUCG-CGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 55202 0.7 0.733296
Target:  5'- ----cGGCGUAGCGCGGauccggcggcccgaGGCgGCgagGGCg -3'
miRNA:   3'- cuugaCCGUAUCGCGCU--------------UCG-CGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 55426 0.66 0.911757
Target:  5'- cGGCUGGCGccacCGCGAgcccuccgagcGGCGCggugGGCc -3'
miRNA:   3'- cUUGACCGUauc-GCGCU-----------UCGCGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 56114 0.7 0.720141
Target:  5'- cGAGC-GGCGggagcgcgccgcagGGCGgGggGCGCgGGCc -3'
miRNA:   3'- -CUUGaCCGUa-------------UCGCgCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 56848 0.68 0.838744
Target:  5'- aGAcCUGGUuccUGGUGCcgcuGAucGCGCUGGCg -3'
miRNA:   3'- -CUuGACCGu--AUCGCG----CUu-CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 57530 0.66 0.89903
Target:  5'- -cACaGGCAcGGCGCG--GCGCacgGGCa -3'
miRNA:   3'- cuUGaCCGUaUCGCGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 57789 0.68 0.838744
Target:  5'- ----cGGCGUcGCGCGGcgGGCGCgcgaaGGCc -3'
miRNA:   3'- cuugaCCGUAuCGCGCU--UCGCGa----CCG- -5'
23778 5' -54.9 NC_005261.1 + 58845 0.69 0.745302
Target:  5'- -cGCUGGgucucccgcacguCGUAGUG-GAAGCGCUGGg -3'
miRNA:   3'- cuUGACC-------------GUAUCGCgCUUCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 60104 0.66 0.911757
Target:  5'- -cGCUGGCc-AGCGCGcc-CGCgGGCa -3'
miRNA:   3'- cuUGACCGuaUCGCGCuucGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 61045 0.66 0.917748
Target:  5'- cAGCUGGC-UGGUGCuGGGC-CUGGa -3'
miRNA:   3'- cUUGACCGuAUCGCGcUUCGcGACCg -5'
23778 5' -54.9 NC_005261.1 + 61230 0.71 0.643335
Target:  5'- -cGCUcGGCGUucGGCGCGAGcucgacuCGCUGGCc -3'
miRNA:   3'- cuUGA-CCGUA--UCGCGCUUc------GCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.