miRNA display CGI


Results 81 - 100 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 62068 0.66 0.89903
Target:  5'- cAGCUGccccGCcucGCGCGAGGCGCUGcccaGCu -3'
miRNA:   3'- cUUGAC----CGuauCGCGCUUCGCGAC----CG- -5'
23778 5' -54.9 NC_005261.1 + 62298 0.66 0.8923
Target:  5'- ----cGGCGccGCGCGGGcGCGC-GGCg -3'
miRNA:   3'- cuugaCCGUauCGCGCUU-CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 62808 0.67 0.855139
Target:  5'- cGGGCUGGgcCAUAucgccGCGCGggGCaCcGGCg -3'
miRNA:   3'- -CUUGACC--GUAU-----CGCGCuuCGcGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 66611 0.73 0.539261
Target:  5'- -uGCUGG-AUGGCGCGcguGCGCaUGGCc -3'
miRNA:   3'- cuUGACCgUAUCGCGCuu-CGCG-ACCG- -5'
23778 5' -54.9 NC_005261.1 + 67086 0.71 0.653826
Target:  5'- cGGGC-GGUccAUGGCGCGAcgcGGUGCgGGCg -3'
miRNA:   3'- -CUUGaCCG--UAUCGCGCU---UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 68114 0.71 0.664299
Target:  5'- cGGGCUGGagcuGCGCGGgccgcGGCGC-GGCg -3'
miRNA:   3'- -CUUGACCguauCGCGCU-----UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 69223 0.76 0.39649
Target:  5'- gGAGCUGuGCGcgcuggGGCGguucgcCGAGGCGCUGGCc -3'
miRNA:   3'- -CUUGAC-CGUa-----UCGC------GCUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 69277 0.66 0.917748
Target:  5'- cGAGCcgcccGCGccgaccccGGCGCGggGCGCcggUGGCg -3'
miRNA:   3'- -CUUGac---CGUa-------UCGCGCuuCGCG---ACCG- -5'
23778 5' -54.9 NC_005261.1 + 69526 0.79 0.247609
Target:  5'- gGAGCUGGCGcgggcgcUGGCGCGc-GCGCUGGg -3'
miRNA:   3'- -CUUGACCGU-------AUCGCGCuuCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 69751 0.73 0.539261
Target:  5'- gGAGgaGGCG-AGCGCGggGgGC-GGCg -3'
miRNA:   3'- -CUUgaCCGUaUCGCGCuuCgCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 70693 0.7 0.736311
Target:  5'- ----aGGCGUccAGCGCGGcccGCGCgGGCa -3'
miRNA:   3'- cuugaCCGUA--UCGCGCUu--CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 70971 0.7 0.705823
Target:  5'- cGAC-GGCGaagaagAGCGCGuGGCGCgcgGGCg -3'
miRNA:   3'- cUUGaCCGUa-----UCGCGCuUCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 71175 0.69 0.756176
Target:  5'- uGAACgcguccgGGCGcAGCucGCGggGCGC-GGCc -3'
miRNA:   3'- -CUUGa------CCGUaUCG--CGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 71409 0.67 0.870684
Target:  5'- aGGC-GGCGUccGGCGCGggGC-CcGGCc -3'
miRNA:   3'- cUUGaCCGUA--UCGCGCuuCGcGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 71955 0.84 0.137539
Target:  5'- -cACUGGCGUcggcgcggGGCGCGGAGCGCgcGGCa -3'
miRNA:   3'- cuUGACCGUA--------UCGCGCUUCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 72464 0.71 0.632835
Target:  5'- cGAGCgcGGCG-AGCGCG-AGCGC-GGCc -3'
miRNA:   3'- -CUUGa-CCGUaUCGCGCuUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 73744 0.66 0.895021
Target:  5'- -cGCgggGGUccGGUGCcacggccgcuucuacGAGGCGCUGGCc -3'
miRNA:   3'- cuUGa--CCGuaUCGCG---------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 73948 0.66 0.89903
Target:  5'- cGGCUuGCAga-CGCGggGCGCgcccgGGCc -3'
miRNA:   3'- cUUGAcCGUaucGCGCuuCGCGa----CCG- -5'
23778 5' -54.9 NC_005261.1 + 74696 0.73 0.570106
Target:  5'- gGAGCUGGCcgccGCGCG-GGCGCggaaccgGGCc -3'
miRNA:   3'- -CUUGACCGuau-CGCGCuUCGCGa------CCG- -5'
23778 5' -54.9 NC_005261.1 + 74752 0.68 0.812689
Target:  5'- -uGCUGGCGcggcAGCGCGccacAGGCGCggaGGUc -3'
miRNA:   3'- cuUGACCGUa---UCGCGC----UUCGCGa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.