miRNA display CGI


Results 101 - 120 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 74877 0.67 0.847044
Target:  5'- cGGACgcGGCGgcGGCgGCGGAgucggcggcccGCGCUGGCc -3'
miRNA:   3'- -CUUGa-CCGUa-UCG-CGCUU-----------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 74940 0.69 0.785083
Target:  5'- gGGACU-GC--GGCGCGGGcGCGCUcGGCg -3'
miRNA:   3'- -CUUGAcCGuaUCGCGCUU-CGCGA-CCG- -5'
23778 5' -54.9 NC_005261.1 + 75484 0.77 0.330941
Target:  5'- cGGCgcgGGCcgcuacgAGCGCGggGCGCUGGa -3'
miRNA:   3'- cUUGa--CCGua-----UCGCGCuuCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 75816 0.67 0.881033
Target:  5'- -cGCUGGUgcccGGCGCGGccgcgcccggggaggGGCGCgcGGCg -3'
miRNA:   3'- cuUGACCGua--UCGCGCU---------------UCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 76076 0.66 0.89903
Target:  5'- aGGGCgGGCugcuGCGCcucguGGCGCUGGa -3'
miRNA:   3'- -CUUGaCCGuau-CGCGcu---UCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 76409 0.68 0.803648
Target:  5'- cGGCcGGCcccGGCGCGugcaGAGCGCcGGCg -3'
miRNA:   3'- cUUGaCCGua-UCGCGC----UUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 76753 0.73 0.570106
Target:  5'- cGGACgUGGCGcaccccgcguucuucGGCGCGGAcgcccccGCGCUGGCg -3'
miRNA:   3'- -CUUG-ACCGUa--------------UCGCGCUU-------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 77067 0.85 0.105257
Target:  5'- --cCUGGCcgGugccGCGCGAGGCGCUGGCg -3'
miRNA:   3'- cuuGACCGuaU----CGCGCUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 77199 0.67 0.855139
Target:  5'- -uGCaGGCG-AGCGCGGuguuccCGCUGGCc -3'
miRNA:   3'- cuUGaCCGUaUCGCGCUuc----GCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 77441 0.66 0.8923
Target:  5'- cAGCUGGuCGUcagccaGGCcCGggGCGC-GGCu -3'
miRNA:   3'- cUUGACC-GUA------UCGcGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 77544 0.7 0.720141
Target:  5'- cGGGCUGGUacggcgccgccgccaGUGGCGcCGccGCGCccUGGCa -3'
miRNA:   3'- -CUUGACCG---------------UAUCGC-GCuuCGCG--ACCG- -5'
23778 5' -54.9 NC_005261.1 + 78509 0.67 0.847044
Target:  5'- cGAGaagaUGGgGaGGCGCG-AGCGgaGGCg -3'
miRNA:   3'- -CUUg---ACCgUaUCGCGCuUCGCgaCCG- -5'
23778 5' -54.9 NC_005261.1 + 80057 0.77 0.362689
Target:  5'- -cACUGGCGgcgGGCGCGggGgGCgUGGg -3'
miRNA:   3'- cuUGACCGUa--UCGCGCuuCgCG-ACCg -5'
23778 5' -54.9 NC_005261.1 + 80297 0.66 0.8923
Target:  5'- ----cGuGCGUGGCGuUGAAGCGCUcacGGUa -3'
miRNA:   3'- cuugaC-CGUAUCGC-GCUUCGCGA---CCG- -5'
23778 5' -54.9 NC_005261.1 + 81353 0.71 0.653826
Target:  5'- gGGGCgggGGCuu-GCGgGggGCGCcgGGCu -3'
miRNA:   3'- -CUUGa--CCGuauCGCgCuuCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 81492 0.67 0.878122
Target:  5'- aGGGCcgcGGC-UAGCGCGgcGCGCgcgccgccgccGGCg -3'
miRNA:   3'- -CUUGa--CCGuAUCGCGCuuCGCGa----------CCG- -5'
23778 5' -54.9 NC_005261.1 + 82166 0.66 0.8923
Target:  5'- cAGCaaGCGcGGCGCGGaaGGCGC-GGCg -3'
miRNA:   3'- cUUGacCGUaUCGCGCU--UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 82578 0.68 0.812689
Target:  5'- cAGCUcGCGcAGCGCGuccucguuGCGCUGGUc -3'
miRNA:   3'- cUUGAcCGUaUCGCGCuu------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 82864 0.66 0.917748
Target:  5'- cAGCgaaGGC--GGCGac-GGCGCUGGCg -3'
miRNA:   3'- cUUGa--CCGuaUCGCgcuUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 83377 0.68 0.838744
Target:  5'- ----cGGCG-AGCGCGGcgAGCGC-GGCc -3'
miRNA:   3'- cuugaCCGUaUCGCGCU--UCGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.