miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 137830 0.78 0.300572
Target:  5'- gGGGCUGGCAgGGCugGCGGAGUuggcgggGCUGGCg -3'
miRNA:   3'- -CUUGACCGUaUCG--CGCUUCG-------CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 137761 0.73 0.549485
Target:  5'- -cGCgggGGCGgGGUGCGggGCGCgcccccgGGCc -3'
miRNA:   3'- cuUGa--CCGUaUCGCGCuuCGCGa------CCG- -5'
23778 5' -54.9 NC_005261.1 + 137052 0.74 0.489233
Target:  5'- cGGACcgucGGCA-GGCGCgGAGGCGCgGGCa -3'
miRNA:   3'- -CUUGa---CCGUaUCGCG-CUUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 136902 0.75 0.423136
Target:  5'- -uACUGGCGUGGUGUGGGccGCGC-GGCc -3'
miRNA:   3'- cuUGACCGUAUCGCGCUU--CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 135743 0.69 0.756176
Target:  5'- -uGCUGGCGcgccucagccGCGCGguGCGCUccGGCg -3'
miRNA:   3'- cuUGACCGUau--------CGCGCuuCGCGA--CCG- -5'
23778 5' -54.9 NC_005261.1 + 135626 0.68 0.816258
Target:  5'- aAGCUGGCGcccuucaugcgcugcUAccuGCGCG-GGCGCgGGCg -3'
miRNA:   3'- cUUGACCGU---------------AU---CGCGCuUCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 135086 0.73 0.570106
Target:  5'- cGGGCUcgcGGCccGGCgGCGGAGCGCgaGGCg -3'
miRNA:   3'- -CUUGA---CCGuaUCG-CGCUUCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 134187 0.69 0.785083
Target:  5'- -uGCggagGGCcUGGCGCGGcucGGCGCgcgGGUc -3'
miRNA:   3'- cuUGa---CCGuAUCGCGCU---UCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 133806 0.7 0.736311
Target:  5'- cGGGCU-GCucgacGGCGaCGAGGCGCUGcGCg -3'
miRNA:   3'- -CUUGAcCGua---UCGC-GCUUCGCGAC-CG- -5'
23778 5' -54.9 NC_005261.1 + 133337 0.67 0.885329
Target:  5'- -uGCcGGCAcgcGCGCGcGGCGCUGccGCg -3'
miRNA:   3'- cuUGaCCGUau-CGCGCuUCGCGAC--CG- -5'
23778 5' -54.9 NC_005261.1 + 133259 0.71 0.684115
Target:  5'- -cGCaGGCGgcGCGCGAguaccagGGCGCcGGCg -3'
miRNA:   3'- cuUGaCCGUauCGCGCU-------UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 132597 0.71 0.664299
Target:  5'- cGGACgcccGGCccGGCGagccgccagGggGCGCUGGCg -3'
miRNA:   3'- -CUUGa---CCGuaUCGCg--------CuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 130759 0.72 0.600317
Target:  5'- -uGCUGGUAaccacggagcagcUGGCGCcccGCGCUGGCc -3'
miRNA:   3'- cuUGACCGU-------------AUCGCGcuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 130494 0.74 0.499075
Target:  5'- cGGCgagGGCcccgacgacGUGGCGC-AGGCGCUGGCc -3'
miRNA:   3'- cUUGa--CCG---------UAUCGCGcUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 129307 0.66 0.911757
Target:  5'- ----cGGCGccccGCGCcu-GCGCUGGCg -3'
miRNA:   3'- cuugaCCGUau--CGCGcuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 128563 0.72 0.580488
Target:  5'- -cGCUGGCGcucuggGGCcCGGuuGCGCUGGCg -3'
miRNA:   3'- cuUGACCGUa-----UCGcGCUu-CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 128105 0.67 0.847044
Target:  5'- cGAGC-GGCGcGGCGCGggGUcg-GGCc -3'
miRNA:   3'- -CUUGaCCGUaUCGCGCuuCGcgaCCG- -5'
23778 5' -54.9 NC_005261.1 + 127863 0.66 0.89903
Target:  5'- cGGCgccagGGCAcgAGCGgGAGucGCGCcGGCg -3'
miRNA:   3'- cUUGa----CCGUa-UCGCgCUU--CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 127754 0.71 0.632835
Target:  5'- gGAGCgGGCcgcggcgGGCGCGAAGaCGCccGGCu -3'
miRNA:   3'- -CUUGaCCGua-----UCGCGCUUC-GCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 127712 0.66 0.8923
Target:  5'- gGAGCUGcGCGUGGCcugccugguaGCgGGAGC-UUGGCg -3'
miRNA:   3'- -CUUGAC-CGUAUCG----------CG-CUUCGcGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.