miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 112346 0.67 0.863021
Target:  5'- aAGCggGGCAUcaugGGCGCgcuGAAGCuGCUGGa -3'
miRNA:   3'- cUUGa-CCGUA----UCGCG---CUUCG-CGACCg -5'
23778 5' -54.9 NC_005261.1 + 112174 0.71 0.674745
Target:  5'- -cGCcGGCcgcGCGCGggGCucGCUGGCc -3'
miRNA:   3'- cuUGaCCGuauCGCGCuuCG--CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 111967 0.71 0.664299
Target:  5'- --cCUGGCcaAGCucgaagGCGggGCGCUGGa -3'
miRNA:   3'- cuuGACCGuaUCG------CGCuuCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 109195 0.66 0.905517
Target:  5'- -cGCgucgGGCGU-GCGC-AGGCGCUcguaGGCg -3'
miRNA:   3'- cuUGa---CCGUAuCGCGcUUCGCGA----CCG- -5'
23778 5' -54.9 NC_005261.1 + 108799 0.69 0.775579
Target:  5'- --gUUGGCAgcGUGCGccaGGGCGCUGaGCc -3'
miRNA:   3'- cuuGACCGUauCGCGC---UUCGCGAC-CG- -5'
23778 5' -54.9 NC_005261.1 + 108754 0.67 0.878122
Target:  5'- ----cGGCGUccgcGGCGCGccGCGCcacGGCa -3'
miRNA:   3'- cuugaCCGUA----UCGCGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 106110 0.69 0.794443
Target:  5'- cGGCcGGCGUcgccGGCGCGcgcGCGCcGGCa -3'
miRNA:   3'- cUUGaCCGUA----UCGCGCuu-CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 105277 0.66 0.906152
Target:  5'- cGGGC-GGCAgcgccggcgagcccgGGCGCGcGAGCGCggGGUc -3'
miRNA:   3'- -CUUGaCCGUa--------------UCGCGC-UUCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 104663 0.67 0.885329
Target:  5'- -cGCUGGCGggcguguGCuGCGGcAGCGCcugGGCc -3'
miRNA:   3'- cuUGACCGUau-----CG-CGCU-UCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 101695 0.67 0.863021
Target:  5'- aAGCgGGCGUGGU-CGAAGCGCUccaGCu -3'
miRNA:   3'- cUUGaCCGUAUCGcGCUUCGCGAc--CG- -5'
23778 5' -54.9 NC_005261.1 + 101441 0.74 0.499075
Target:  5'- ----aGGC--GGCGCGGuccAGCGCUGGCc -3'
miRNA:   3'- cuugaCCGuaUCGCGCU---UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 99447 0.74 0.488254
Target:  5'- ----gGGCGgaagAGCGCGGgccgacccgcggcGGCGCUGGCc -3'
miRNA:   3'- cuugaCCGUa---UCGCGCU-------------UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 99084 0.68 0.812689
Target:  5'- ----aGGCAgggcGGCGCGgcGCGCagcGGCu -3'
miRNA:   3'- cuugaCCGUa---UCGCGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 98733 0.66 0.911757
Target:  5'- gGGGCacGCGgccGCGCG-GGCGUUGGCc -3'
miRNA:   3'- -CUUGacCGUau-CGCGCuUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 98349 0.67 0.855139
Target:  5'- cGACgcgggGGCGggggugGGCGCG-GGCuCUGGCg -3'
miRNA:   3'- cUUGa----CCGUa-----UCGCGCuUCGcGACCG- -5'
23778 5' -54.9 NC_005261.1 + 97995 0.75 0.460277
Target:  5'- uGAAgUGGgAggcGGCG-GggGCGCUGGCg -3'
miRNA:   3'- -CUUgACCgUa--UCGCgCuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 97740 0.73 0.529102
Target:  5'- cGGCUGGCA-GGgGCGggGCggGCUcGGCg -3'
miRNA:   3'- cUUGACCGUaUCgCGCuuCG--CGA-CCG- -5'
23778 5' -54.9 NC_005261.1 + 97631 0.67 0.869928
Target:  5'- gGAGCgGGCGgagcgGGCGCGGgugccgcaccuggGGgGCcGGCg -3'
miRNA:   3'- -CUUGaCCGUa----UCGCGCU-------------UCgCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 97572 0.69 0.775579
Target:  5'- gGggUUGGCucgGUGGCGCGGgcGGaGCgGGCg -3'
miRNA:   3'- -CuuGACCG---UAUCGCGCU--UCgCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 97193 0.7 0.702738
Target:  5'- cGGGCcgcGGCcggaAGCGCcgcggccacgcucgGAGGCGCUGGCg -3'
miRNA:   3'- -CUUGa--CCGua--UCGCG--------------CUUCGCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.