miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 97115 0.7 0.702738
Target:  5'- cGGGCcgcGGCcggaGGCGCcgcggccacgcucgGAGGCGCUGGCg -3'
miRNA:   3'- -CUUGa--CCGua--UCGCG--------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 96958 0.67 0.854339
Target:  5'- cGGCggGGCAgccgccgGGCGCGAuucacgcggccucGGCGC-GGCu -3'
miRNA:   3'- cUUGa-CCGUa------UCGCGCU-------------UCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 96616 0.66 0.89903
Target:  5'- ----cGcGCGUGGCGCGcAGCcGCcgGGCg -3'
miRNA:   3'- cuugaC-CGUAUCGCGCuUCG-CGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 96327 0.72 0.595088
Target:  5'- uGACUGGCcUGGCGCGGccgcGCGCaccugacgcccugacUGGCc -3'
miRNA:   3'- cUUGACCGuAUCGCGCUu---CGCG---------------ACCG- -5'
23778 5' -54.9 NC_005261.1 + 95672 0.67 0.877388
Target:  5'- cGGGCgcgGGUGUgagcacgugcacgAGCGCGAGuauGCGCgcgGGCu -3'
miRNA:   3'- -CUUGa--CCGUA-------------UCGCGCUU---CGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 95636 0.75 0.450827
Target:  5'- gGAGCggcugGGCG-AGCGCGAcGCGC-GGCg -3'
miRNA:   3'- -CUUGa----CCGUaUCGCGCUuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 94773 0.67 0.885329
Target:  5'- aGGACgUGGCGccGCGCGAgcucgaGGUGCUGcuGCc -3'
miRNA:   3'- -CUUG-ACCGUauCGCGCU------UCGCGAC--CG- -5'
23778 5' -54.9 NC_005261.1 + 94653 0.66 0.90488
Target:  5'- cGAACaugcGGCuccGCGagcucauucccccUGAGGCGCUGGCc -3'
miRNA:   3'- -CUUGa---CCGuauCGC-------------GCUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 94184 0.68 0.812689
Target:  5'- -----aGCGUGGCGCGguGCGC-GGCc -3'
miRNA:   3'- cuugacCGUAUCGCGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 93676 0.71 0.653826
Target:  5'- cGGGC-GGCGgcGCcgGCGggGCGCcGGCg -3'
miRNA:   3'- -CUUGaCCGUauCG--CGCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 90888 0.69 0.76594
Target:  5'- uGGGCgacGGCAUGGCGCGGcaggucucggcGGCGCUc-- -3'
miRNA:   3'- -CUUGa--CCGUAUCGCGCU-----------UCGCGAccg -5'
23778 5' -54.9 NC_005261.1 + 90732 0.75 0.460277
Target:  5'- -cGCUGGgcc-GCGCcuGAGGCGCUGGCg -3'
miRNA:   3'- cuUGACCguauCGCG--CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 90401 0.67 0.859894
Target:  5'- gGGGCUGGCGcccGGCGCGGAcuaCGCgacguucgacgugGGCg -3'
miRNA:   3'- -CUUGACCGUa--UCGCGCUUc--GCGa------------CCG- -5'
23778 5' -54.9 NC_005261.1 + 90202 0.66 0.89903
Target:  5'- gGAGCgcgggGGCGgcggAGCGCccucGCGCggcgGGCg -3'
miRNA:   3'- -CUUGa----CCGUa---UCGCGcuu-CGCGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 89933 0.66 0.917748
Target:  5'- gGAGCUgucGGCgGUGGCGCG----GCUGGCc -3'
miRNA:   3'- -CUUGA---CCG-UAUCGCGCuucgCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 89079 0.72 0.622334
Target:  5'- cGGCUGGUAccGGCuGCGGcccgggcGCGCUGGCg -3'
miRNA:   3'- cUUGACCGUa-UCG-CGCUu------CGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 88809 0.67 0.863021
Target:  5'- aGGACgccGGCGgcggGGCgGCGgcGCGCgccGGCc -3'
miRNA:   3'- -CUUGa--CCGUa---UCG-CGCuuCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 88448 0.66 0.8923
Target:  5'- -uGCUGGCcgcgccGCGUG-AGCGUgugGGCg -3'
miRNA:   3'- cuUGACCGuau---CGCGCuUCGCGa--CCG- -5'
23778 5' -54.9 NC_005261.1 + 88195 0.66 0.917748
Target:  5'- -cGCcGGCGaGGCGgGccGCGCcGGCa -3'
miRNA:   3'- cuUGaCCGUaUCGCgCuuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 88093 0.66 0.89903
Target:  5'- cGAACggGGCGaGGCGCccccgcGCGCcGGCu -3'
miRNA:   3'- -CUUGa-CCGUaUCGCGcuu---CGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.