Results 81 - 100 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 87874 | 0.69 | 0.76594 |
Target: 5'- aGAGgUGGCGgagagaGGCGCGGAGaggGCgGGCc -3' miRNA: 3'- -CUUgACCGUa-----UCGCGCUUCg--CGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 87484 | 0.68 | 0.803648 |
Target: 5'- ----aGGUucGGCGCGGccGUGCUGGCg -3' miRNA: 3'- cuugaCCGuaUCGCGCUu-CGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 85961 | 0.67 | 0.847044 |
Target: 5'- aAGCUGGCGUGGUccGUGAuugcGCGCUcGaGCu -3' miRNA: 3'- cUUGACCGUAUCG--CGCUu---CGCGA-C-CG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 84967 | 0.66 | 0.8923 |
Target: 5'- ----aGGCGUcgGGCGCGuccgcgauGCGCcGGCg -3' miRNA: 3'- cuugaCCGUA--UCGCGCuu------CGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 84270 | 0.69 | 0.76594 |
Target: 5'- ----cGGCAUGGCGC-AGGUGCcgccGGCg -3' miRNA: 3'- cuugaCCGUAUCGCGcUUCGCGa---CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 84126 | 0.73 | 0.529102 |
Target: 5'- ----gGGCAgcGgGCGggGuCGCUGGCg -3' miRNA: 3'- cuugaCCGUauCgCGCuuC-GCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 83877 | 0.68 | 0.803648 |
Target: 5'- cGGACgccgGGuCAgcucugAGCGCGggGCcGCcgGGCu -3' miRNA: 3'- -CUUGa---CC-GUa-----UCGCGCuuCG-CGa-CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 83377 | 0.68 | 0.838744 |
Target: 5'- ----cGGCG-AGCGCGGcgAGCGC-GGCc -3' miRNA: 3'- cuugaCCGUaUCGCGCU--UCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 82864 | 0.66 | 0.917748 |
Target: 5'- cAGCgaaGGC--GGCGac-GGCGCUGGCg -3' miRNA: 3'- cUUGa--CCGuaUCGCgcuUCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 82578 | 0.68 | 0.812689 |
Target: 5'- cAGCUcGCGcAGCGCGuccucguuGCGCUGGUc -3' miRNA: 3'- cUUGAcCGUaUCGCGCuu------CGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 82166 | 0.66 | 0.8923 |
Target: 5'- cAGCaaGCGcGGCGCGGaaGGCGC-GGCg -3' miRNA: 3'- cUUGacCGUaUCGCGCU--UCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 81492 | 0.67 | 0.878122 |
Target: 5'- aGGGCcgcGGC-UAGCGCGgcGCGCgcgccgccgccGGCg -3' miRNA: 3'- -CUUGa--CCGuAUCGCGCuuCGCGa----------CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 81353 | 0.71 | 0.653826 |
Target: 5'- gGGGCgggGGCuu-GCGgGggGCGCcgGGCu -3' miRNA: 3'- -CUUGa--CCGuauCGCgCuuCGCGa-CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 80297 | 0.66 | 0.8923 |
Target: 5'- ----cGuGCGUGGCGuUGAAGCGCUcacGGUa -3' miRNA: 3'- cuugaC-CGUAUCGC-GCUUCGCGA---CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 80057 | 0.77 | 0.362689 |
Target: 5'- -cACUGGCGgcgGGCGCGggGgGCgUGGg -3' miRNA: 3'- cuUGACCGUa--UCGCGCuuCgCG-ACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 78509 | 0.67 | 0.847044 |
Target: 5'- cGAGaagaUGGgGaGGCGCG-AGCGgaGGCg -3' miRNA: 3'- -CUUg---ACCgUaUCGCGCuUCGCgaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 77544 | 0.7 | 0.720141 |
Target: 5'- cGGGCUGGUacggcgccgccgccaGUGGCGcCGccGCGCccUGGCa -3' miRNA: 3'- -CUUGACCG---------------UAUCGC-GCuuCGCG--ACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 77441 | 0.66 | 0.8923 |
Target: 5'- cAGCUGGuCGUcagccaGGCcCGggGCGC-GGCu -3' miRNA: 3'- cUUGACC-GUA------UCGcGCuuCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 77199 | 0.67 | 0.855139 |
Target: 5'- -uGCaGGCG-AGCGCGGuguuccCGCUGGCc -3' miRNA: 3'- cuUGaCCGUaUCGCGCUuc----GCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 77067 | 0.85 | 0.105257 |
Target: 5'- --cCUGGCcgGugccGCGCGAGGCGCUGGCg -3' miRNA: 3'- cuuGACCGuaU----CGCGCUUCGCGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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