miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 5' -54.9 NC_005261.1 + 27355 0.66 0.917748
Target:  5'- gGAGC-GGCGccggaccGGCGCGAGGC-CggugGGCa -3'
miRNA:   3'- -CUUGaCCGUa------UCGCGCUUCGcGa---CCG- -5'
23778 5' -54.9 NC_005261.1 + 43440 0.76 0.405252
Target:  5'- gGAGCUGGCucGGCGCcugGAcgucgccgggcgGGUGCUGGCg -3'
miRNA:   3'- -CUUGACCGuaUCGCG---CU------------UCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 136902 0.75 0.423136
Target:  5'- -uACUGGCGUGGUGUGGGccGCGC-GGCc -3'
miRNA:   3'- cuUGACCGUAUCGCGCUU--CGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 31814 0.75 0.423136
Target:  5'- -cGCUGGCcugAGCgGCGc-GCGCUGGCg -3'
miRNA:   3'- cuUGACCGua-UCG-CGCuuCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 31246 0.75 0.429506
Target:  5'- cGAGCccUGGCGcccGGCGCucgccuucgaccccGAGGCGCUGGCc -3'
miRNA:   3'- -CUUG--ACCGUa--UCGCG--------------CUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 13684 0.75 0.432253
Target:  5'- gGGGCgcgcgGGCGUGGgGCGggGCggGCUGGg -3'
miRNA:   3'- -CUUGa----CCGUAUCgCGCuuCG--CGACCg -5'
23778 5' -54.9 NC_005261.1 + 30220 0.75 0.441485
Target:  5'- -cGCUGGC--GGCGCGAaccguGGCcccGCUGGCg -3'
miRNA:   3'- cuUGACCGuaUCGCGCU-----UCG---CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 29928 0.75 0.449888
Target:  5'- cGAGCUGGCGgacgcuGCgcugcggccugccGCGAGGCGCUagaGGCg -3'
miRNA:   3'- -CUUGACCGUau----CG-------------CGCUUCGCGA---CCG- -5'
23778 5' -54.9 NC_005261.1 + 95636 0.75 0.450827
Target:  5'- gGAGCggcugGGCG-AGCGCGAcGCGC-GGCg -3'
miRNA:   3'- -CUUGa----CCGUaUCGCGCUuCGCGaCCG- -5'
23778 5' -54.9 NC_005261.1 + 69223 0.76 0.39649
Target:  5'- gGAGCUGuGCGcgcuggGGCGguucgcCGAGGCGCUGGCc -3'
miRNA:   3'- -CUUGAC-CGUa-----UCGC------GCUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 80057 0.77 0.362689
Target:  5'- -cACUGGCGgcgGGCGCGggGgGCgUGGg -3'
miRNA:   3'- cuUGACCGUa--UCGCGCuuCgCG-ACCg -5'
23778 5' -54.9 NC_005261.1 + 118370 0.77 0.338682
Target:  5'- cGGGCgcuggGGCGcgcGGCcCGAGGCGCUGGCg -3'
miRNA:   3'- -CUUGa----CCGUa--UCGcGCUUCGCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 71955 0.84 0.137539
Target:  5'- -cACUGGCGUcggcgcggGGCGCGGAGCGCgcGGCa -3'
miRNA:   3'- cuUGACCGUA--------UCGCGCUUCGCGa-CCG- -5'
23778 5' -54.9 NC_005261.1 + 1048 0.81 0.193019
Target:  5'- cGGGCggcGGCGUuagcGGCGCGggGgGCUGGCc -3'
miRNA:   3'- -CUUGa--CCGUA----UCGCGCuuCgCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 69526 0.79 0.247609
Target:  5'- gGAGCUGGCGcgggcgcUGGCGCGc-GCGCUGGg -3'
miRNA:   3'- -CUUGACCGU-------AUCGCGCuuCGCGACCg -5'
23778 5' -54.9 NC_005261.1 + 21186 0.79 0.24822
Target:  5'- -cGCUGGCGcgAGCGCGGccgcGGaCGCUGGCc -3'
miRNA:   3'- cuUGACCGUa-UCGCGCU----UC-GCGACCG- -5'
23778 5' -54.9 NC_005261.1 + 112669 0.79 0.28042
Target:  5'- cGAGC-GGCuggAGCGCGAGGgGCUGGg -3'
miRNA:   3'- -CUUGaCCGua-UCGCGCUUCgCGACCg -5'
23778 5' -54.9 NC_005261.1 + 147 0.78 0.300572
Target:  5'- gGGGCUGGCAgGGCugGCGGAGUuggcgggGCUGGCg -3'
miRNA:   3'- -CUUGACCGUaUCG--CGCUUCG-------CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 137830 0.78 0.300572
Target:  5'- gGGGCUGGCAgGGCugGCGGAGUuggcgggGCUGGCg -3'
miRNA:   3'- -CUUGACCGUaUCG--CGCUUCG-------CGACCG- -5'
23778 5' -54.9 NC_005261.1 + 75484 0.77 0.330941
Target:  5'- cGGCgcgGGCcgcuacgAGCGCGggGCGCUGGa -3'
miRNA:   3'- cUUGa--CCGua-----UCGCGCuuCGCGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.