Results 41 - 60 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 112669 | 0.79 | 0.28042 |
Target: 5'- cGAGC-GGCuggAGCGCGAGGgGCUGGg -3' miRNA: 3'- -CUUGaCCGua-UCGCGCUUCgCGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 21186 | 0.79 | 0.24822 |
Target: 5'- -cGCUGGCGcgAGCGCGGccgcGGaCGCUGGCc -3' miRNA: 3'- cuUGACCGUa-UCGCGCU----UC-GCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 69526 | 0.79 | 0.247609 |
Target: 5'- gGAGCUGGCGcgggcgcUGGCGCGc-GCGCUGGg -3' miRNA: 3'- -CUUGACCGU-------AUCGCGCuuCGCGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 1048 | 0.81 | 0.193019 |
Target: 5'- cGGGCggcGGCGUuagcGGCGCGggGgGCUGGCc -3' miRNA: 3'- -CUUGa--CCGUA----UCGCGCuuCgCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 71955 | 0.84 | 0.137539 |
Target: 5'- -cACUGGCGUcggcgcggGGCGCGGAGCGCgcGGCa -3' miRNA: 3'- cuUGACCGUA--------UCGCGCUUCGCGa-CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 31814 | 0.75 | 0.423136 |
Target: 5'- -cGCUGGCcugAGCgGCGc-GCGCUGGCg -3' miRNA: 3'- cuUGACCGua-UCG-CGCuuCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 31246 | 0.75 | 0.429506 |
Target: 5'- cGAGCccUGGCGcccGGCGCucgccuucgaccccGAGGCGCUGGCc -3' miRNA: 3'- -CUUG--ACCGUa--UCGCG--------------CUUCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 84126 | 0.73 | 0.529102 |
Target: 5'- ----gGGCAgcGgGCGggGuCGCUGGCg -3' miRNA: 3'- cuugaCCGUauCgCGCuuC-GCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 29525 | 0.73 | 0.529102 |
Target: 5'- --cCUGGCugcagAGCGCGAAGCucGCgGGCc -3' miRNA: 3'- cuuGACCGua---UCGCGCUUCG--CGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 97740 | 0.73 | 0.529102 |
Target: 5'- cGGCUGGCA-GGgGCGggGCggGCUcGGCg -3' miRNA: 3'- cUUGACCGUaUCgCGCuuCG--CGA-CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 130494 | 0.74 | 0.499075 |
Target: 5'- cGGCgagGGCcccgacgacGUGGCGC-AGGCGCUGGCc -3' miRNA: 3'- cUUGa--CCG---------UAUCGCGcUUCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 101441 | 0.74 | 0.499075 |
Target: 5'- ----aGGC--GGCGCGGuccAGCGCUGGCc -3' miRNA: 3'- cuugaCCGuaUCGCGCU---UCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 137052 | 0.74 | 0.489233 |
Target: 5'- cGGACcgucGGCA-GGCGCgGAGGCGCgGGCa -3' miRNA: 3'- -CUUGa---CCGUaUCGCG-CUUCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 99447 | 0.74 | 0.488254 |
Target: 5'- ----gGGCGgaagAGCGCGGgccgacccgcggcGGCGCUGGCc -3' miRNA: 3'- cuugaCCGUa---UCGCGCU-------------UCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 97995 | 0.75 | 0.460277 |
Target: 5'- uGAAgUGGgAggcGGCG-GggGCGCUGGCg -3' miRNA: 3'- -CUUgACCgUa--UCGCgCuuCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 90732 | 0.75 | 0.460277 |
Target: 5'- -cGCUGGgcc-GCGCcuGAGGCGCUGGCg -3' miRNA: 3'- cuUGACCguauCGCG--CUUCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 95636 | 0.75 | 0.450827 |
Target: 5'- gGAGCggcugGGCG-AGCGCGAcGCGC-GGCg -3' miRNA: 3'- -CUUGa----CCGUaUCGCGCUuCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 29928 | 0.75 | 0.449888 |
Target: 5'- cGAGCUGGCGgacgcuGCgcugcggccugccGCGAGGCGCUagaGGCg -3' miRNA: 3'- -CUUGACCGUau----CG-------------CGCUUCGCGA---CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 30220 | 0.75 | 0.441485 |
Target: 5'- -cGCUGGC--GGCGCGAaccguGGCcccGCUGGCg -3' miRNA: 3'- cuUGACCGuaUCGCGCU-----UCG---CGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 13684 | 0.75 | 0.432253 |
Target: 5'- gGGGCgcgcgGGCGUGGgGCGggGCggGCUGGg -3' miRNA: 3'- -CUUGa----CCGUAUCgCGCuuCG--CGACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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