Results 81 - 100 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 130759 | 0.72 | 0.600317 |
Target: 5'- -uGCUGGUAaccacggagcagcUGGCGCcccGCGCUGGCc -3' miRNA: 3'- cuUGACCGU-------------AUCGCGcuuCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 20550 | 0.72 | 0.622334 |
Target: 5'- -uGCUGGaCGUGGCgGCGGgcugcgcagcGGCGCcGGCg -3' miRNA: 3'- cuUGACC-GUAUCG-CGCU----------UCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 33058 | 0.72 | 0.622334 |
Target: 5'- aGGACUcGGCGccggGGaCGCG--GCGCUGGCg -3' miRNA: 3'- -CUUGA-CCGUa---UC-GCGCuuCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 89079 | 0.72 | 0.622334 |
Target: 5'- cGGCUGGUAccGGCuGCGGcccgggcGCGCUGGCg -3' miRNA: 3'- cUUGACCGUa-UCG-CGCUu------CGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 16175 | 0.71 | 0.632835 |
Target: 5'- gGGGCgcgGGCGUGGCGgGGgugGGCGggGGCc -3' miRNA: 3'- -CUUGa--CCGUAUCGCgCU---UCGCgaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 122629 | 0.71 | 0.632835 |
Target: 5'- uGAAC-GGCG-AGCGCGAGGC-CcGGCg -3' miRNA: 3'- -CUUGaCCGUaUCGCGCUUCGcGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 127754 | 0.71 | 0.632835 |
Target: 5'- gGAGCgGGCcgcggcgGGCGCGAAGaCGCccGGCu -3' miRNA: 3'- -CUUGaCCGua-----UCGCGCUUC-GCGa-CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 76753 | 0.73 | 0.570106 |
Target: 5'- cGGACgUGGCGcaccccgcguucuucGGCGCGGAcgcccccGCGCUGGCg -3' miRNA: 3'- -CUUG-ACCGUa--------------UCGCGCUU-------CGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 74696 | 0.73 | 0.570106 |
Target: 5'- gGAGCUGGCcgccGCGCG-GGCGCggaaccgGGCc -3' miRNA: 3'- -CUUGACCGuau-CGCGCuUCGCGa------CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 124626 | 0.73 | 0.559769 |
Target: 5'- cAGC-GGCAUcuGCGCGAagaaGGCGCUGGg -3' miRNA: 3'- cUUGaCCGUAu-CGCGCU----UCGCGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 97740 | 0.73 | 0.529102 |
Target: 5'- cGGCUGGCA-GGgGCGggGCggGCUcGGCg -3' miRNA: 3'- cUUGACCGUaUCgCGCuuCG--CGA-CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 29525 | 0.73 | 0.529102 |
Target: 5'- --cCUGGCugcagAGCGCGAAGCucGCgGGCc -3' miRNA: 3'- cuuGACCGua---UCGCGCUUCG--CGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 84126 | 0.73 | 0.529102 |
Target: 5'- ----gGGCAgcGgGCGggGuCGCUGGCg -3' miRNA: 3'- cuugaCCGUauCgCGCuuC-GCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 66611 | 0.73 | 0.539261 |
Target: 5'- -uGCUGG-AUGGCGCGcguGCGCaUGGCc -3' miRNA: 3'- cuUGACCgUAUCGCGCuu-CGCG-ACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 46544 | 0.73 | 0.539261 |
Target: 5'- -cGCUGGCAgucgucccgcAGCGCG-AGCGCUGcuGCg -3' miRNA: 3'- cuUGACCGUa---------UCGCGCuUCGCGAC--CG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 69751 | 0.73 | 0.539261 |
Target: 5'- gGAGgaGGCG-AGCGCGggGgGC-GGCg -3' miRNA: 3'- -CUUgaCCGUaUCGCGCuuCgCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 127334 | 0.73 | 0.539261 |
Target: 5'- -cGCgggGGCcggAGCgGCGggGCGCUGGg -3' miRNA: 3'- cuUGa--CCGua-UCG-CGCuuCGCGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 27248 | 0.73 | 0.549485 |
Target: 5'- --cCUGGgGUGGgGCGggGUGUgcgGGCa -3' miRNA: 3'- cuuGACCgUAUCgCGCuuCGCGa--CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 78 | 0.73 | 0.549485 |
Target: 5'- -cGCgggGGCGgGGUGCGggGCGCgcccccgGGCc -3' miRNA: 3'- cuUGa--CCGUaUCGCGCuuCGCGa------CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 137761 | 0.73 | 0.549485 |
Target: 5'- -cGCgggGGCGgGGUGCGggGCGCgcccccgGGCc -3' miRNA: 3'- cuUGa--CCGUaUCGCGCuuCGCGa------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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