Results 21 - 40 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 90732 | 0.75 | 0.460277 |
Target: 5'- -cGCUGGgcc-GCGCcuGAGGCGCUGGCg -3' miRNA: 3'- cuUGACCguauCGCG--CUUCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 95636 | 0.75 | 0.450827 |
Target: 5'- gGAGCggcugGGCG-AGCGCGAcGCGC-GGCg -3' miRNA: 3'- -CUUGa----CCGUaUCGCGCUuCGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 75484 | 0.77 | 0.330941 |
Target: 5'- cGGCgcgGGCcgcuacgAGCGCGggGCGCUGGa -3' miRNA: 3'- cUUGa--CCGua-----UCGCGCuuCGCGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 137830 | 0.78 | 0.300572 |
Target: 5'- gGGGCUGGCAgGGCugGCGGAGUuggcgggGCUGGCg -3' miRNA: 3'- -CUUGACCGUaUCG--CGCUUCG-------CGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 147 | 0.78 | 0.300572 |
Target: 5'- gGGGCUGGCAgGGCugGCGGAGUuggcgggGCUGGCg -3' miRNA: 3'- -CUUGACCGUaUCG--CGCUUCG-------CGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 112669 | 0.79 | 0.28042 |
Target: 5'- cGAGC-GGCuggAGCGCGAGGgGCUGGg -3' miRNA: 3'- -CUUGaCCGua-UCGCGCUUCgCGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 21186 | 0.79 | 0.24822 |
Target: 5'- -cGCUGGCGcgAGCGCGGccgcGGaCGCUGGCc -3' miRNA: 3'- cuUGACCGUa-UCGCGCU----UC-GCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 69526 | 0.79 | 0.247609 |
Target: 5'- gGAGCUGGCGcgggcgcUGGCGCGc-GCGCUGGg -3' miRNA: 3'- -CUUGACCGU-------AUCGCGCuuCGCGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 1048 | 0.81 | 0.193019 |
Target: 5'- cGGGCggcGGCGUuagcGGCGCGggGgGCUGGCc -3' miRNA: 3'- -CUUGa--CCGUA----UCGCGCuuCgCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 71955 | 0.84 | 0.137539 |
Target: 5'- -cACUGGCGUcggcgcggGGCGCGGAGCGCgcGGCa -3' miRNA: 3'- cuUGACCGUA--------UCGCGCUUCGCGa-CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 118370 | 0.77 | 0.338682 |
Target: 5'- cGGGCgcuggGGCGcgcGGCcCGAGGCGCUGGCg -3' miRNA: 3'- -CUUGa----CCGUa--UCGcGCUUCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 80057 | 0.77 | 0.362689 |
Target: 5'- -cACUGGCGgcgGGCGCGggGgGCgUGGg -3' miRNA: 3'- cuUGACCGUa--UCGCGCuuCgCG-ACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 29928 | 0.75 | 0.449888 |
Target: 5'- cGAGCUGGCGgacgcuGCgcugcggccugccGCGAGGCGCUagaGGCg -3' miRNA: 3'- -CUUGACCGUau----CG-------------CGCUUCGCGA---CCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 30220 | 0.75 | 0.441485 |
Target: 5'- -cGCUGGC--GGCGCGAaccguGGCcccGCUGGCg -3' miRNA: 3'- cuUGACCGuaUCGCGCU-----UCG---CGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 13684 | 0.75 | 0.432253 |
Target: 5'- gGGGCgcgcgGGCGUGGgGCGggGCggGCUGGg -3' miRNA: 3'- -CUUGa----CCGUAUCgCGCuuCG--CGACCg -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 31246 | 0.75 | 0.429506 |
Target: 5'- cGAGCccUGGCGcccGGCGCucgccuucgaccccGAGGCGCUGGCc -3' miRNA: 3'- -CUUG--ACCGUa--UCGCG--------------CUUCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 31814 | 0.75 | 0.423136 |
Target: 5'- -cGCUGGCcugAGCgGCGc-GCGCUGGCg -3' miRNA: 3'- cuUGACCGua-UCG-CGCuuCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 136902 | 0.75 | 0.423136 |
Target: 5'- -uACUGGCGUGGUGUGGGccGCGC-GGCc -3' miRNA: 3'- cuUGACCGUAUCGCGCUU--CGCGaCCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 43440 | 0.76 | 0.405252 |
Target: 5'- gGAGCUGGCucGGCGCcugGAcgucgccgggcgGGUGCUGGCg -3' miRNA: 3'- -CUUGACCGuaUCGCG---CU------------UCGCGACCG- -5' |
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23778 | 5' | -54.9 | NC_005261.1 | + | 69223 | 0.76 | 0.39649 |
Target: 5'- gGAGCUGuGCGcgcuggGGCGguucgcCGAGGCGCUGGCc -3' miRNA: 3'- -CUUGAC-CGUa-----UCGC------GCUUCGCGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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